barSeed - Barley Seed Development Database

Probe CUST_34596_PI390587928

Source Contig U35_42304

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34596_PI390587928	Hv_44K_v2	AGACGGGTCATATCCTCTGCTTGAACTTCTAGATATTTCTCTTACCTTTTTATCAGAATA	79	GeneList: saddlebrown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.266	0.442	1.100	1.636	1.076	1.345
Raw	8.490	19.668	48.111	107.282	25.313	35.844

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56003.4	1844	2e-24	1179 - 1238	100	60 / 60	plus	ABC05177 ABC37901
Harvest21	ABC37901	608	3e-25	80 - 139	100	60 / 60	minus	ABC37901
Harvest35	U35_42304	608	3e-25	80 - 139	100	60 / 60	minus

Contig Sequence (608 bp)

>U35_42304 608 Hv_44K_v2
TTTTTTTTTTTTTTTTTGCAGAAGCAATCATAGTATATTACTGATTTCAGAACCTCTTGG
AAGATACCTTTTGTTTTCATATTCTGATAAAAAGGTAAGAGAAATATCTAGAAGTTCAAG
CAGAGGATATGACCCGTCTCTGCTAACATGAATATTATAGGCCAATTTCCTAAAACATCG
AATTAAAAGCATATTCAGAATGAATTATCTAAAATAGCGAATGCATATCCTGCTAACCCA
AACTGAAAGTTGATCATGAATAAAGGATTCTAAGCCAATTGTCGGGAAAACATGCTGAGA
CAAAATTACCCTGAAGAGCGTTATAAAAAATTGTTTAGCAAAAACAGTAGGAGTAATGTA
TGCAACTTCCACAATTGAGAGGGGGAAAATTACTACCTGCTGGAAAGTGCTAAGAGAGGC
CAAAATAGAGCCACCAATCCAGACACTGTACTTCCTTTCAGGTGGTGCAATAACTTTAAC
CTTCATACTGCTAGGAGCAAGGGCCGTGATCTCCTTGCTCATACGATCAGCAATTCCAGG
AAACATGGTAGAACCACCACTGAGAACAACATTACCGTACAGATCCTTTCTGATATCGAC
ATCACACT

Homology of Contig U35_42304 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None