barSeed - Barley Seed Development Database

Probe CUST_34590_PI390587928

Source Contig U35_199

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34590_PI390587928	Hv_44K_v2	TCATGCACCATCATCTGTGCGATTCAATCCAATACTAGATAAAACTTGGGAATAAATACA	1028	GeneList: black MasterList: Hordein_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.015	0.010	0.211	2.213	4.889	7.369
Raw	9.975	9.077	247.408	3689.387	2940.897	4853.730

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251750.1	1148	7e-23	1072 - 1131	98	59 / 60	plus	ABC00209 ABC28950 ABC32362
MLOC	MLOC_66711.1	2132	7e-23	896 - 955	98	59 / 60	minus	ABC00209 ABC28950 ABC32362
JLOC1	JLOC1_43995.1	1222	4e-23	27 - 86	98	59 / 60	minus
Harvest21	ABC00804	1131	1e-23	1029 - 1088	98	59 / 60	plus
Harvest21	ABC00209	1153	1e-23	1058 - 1117	98	59 / 60	plus	ABC00209
Harvest21	ABC28950	261	5e-23	168 - 226	98	58 / 59	plus	ABC28950
Harvest35	U35_199	1131	3e-25	1029 - 1088	100	60 / 60	plus
Harvest35	U35_67	1153	1e-23	1058 - 1117	98	59 / 60	plus

Contig Sequence (1131 bp)

>U35_199 1131 Hv_44K_v2
AAAGATCTGCAGCATAAACATCCAAACGAAACAATCAAGAGTAACCACAAATCAACCATG
AAGATCTTCCTATTGTTTTCCCTCCTTGGTGTGGCAACGGCCATTACTACCACCACCATG
CAGTTCAACCCAAGCGGCCTTGAACTAGAAAGGCCACAACAATTATTTCCACAATGGCAA
CCACTTCCCCAACAACCACCATTTCTGCAGCAAGAGCCAGAACAACCATATCCACAACAA
CAACCACTTCCCCAACAACAACCATTTCCGCAGCAACCACAACTTCCCCATCAACATCAA
TTTCCACAGCAGCTGCCACAACAACAATTTCCGCAGCAGATGCCACTCCAGCCGCAACAA
CAACCACAATTCCCGCAACAAAAACCATTTGGCCAATATCAACAACCATTAACACAACAA
CCATATCCGCAACAGCAACCATTGGCACAACAACAACCTTCTATAGAGGAACAACATCAA
TTGAACTTGTGCAAGGAGTTCCTCCTACAACAGTGCACCCTGGACGAGAAGGTACCATTA
CTCCAGTCAGTGATCTCGTTCCTCCGACCACATATCTCGCAACAAAACAGTTGCCAATTG
AAGCGACAACAATGTTGTCAACAACTAGCAAATATCAATGAGCAATCCCGATGCCCAGCC
ATCCAAACCATTGTGCATGCCATCGTCATGCAACAACAACAACAACAAGTACAACAACAG
GTGGGTCATGGTTTTGTCCAATCTCAACTGCAACAGTTGGGCCAGGGAATGCCCATCCAG
CTTCAACAACAGCCGGGCCAGGCCTTTGTCCTACCTCAACAACAAGCCCAGTTCAAGGTG
GTTGGGTCATTGGTGATTCAGACACTTCCTATGTTATGCAATGTGCATGTCCCACCTTAT
TGCTCACCATTTGGTAGCATGGCTACCGGCAGTGGTGGCCAATGAAATGACAAGAGTTGT
AATACTAGATCGATGGACCTTCATTGTTACTCGATTGGAGTATCGATGTAGCAATGAAAA
ATAAAGTGTCATGCACCATCATCTGTGCGATTCAATCCAATACTAGATAAAACTTGGGAA
TAAATACAAACAAATAATTGTTTGCAAAAAAAATAAAAAAAAAAAAAAAAA

Homology of Contig U35_199 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None