barSeed - Barley Seed Development Database

Probe CUST_34587_PI390587928

Source Contig U35_28015

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34587_PI390587928	Hv_44K_v2	TAACCAAAGCTCAAACCTTAACCAGCGGCACTGCATGCAGTTACATGCAAATCCATTAGC	140	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356678	2035	2e-24	1769 - 1828	100	60 / 60	minus	ABC04206
MLOC	MLOC_65700.2	1790	2e-24	1485 - 1544	100	60 / 60	minus	ABC04206
MLOC	MLOC_65700.1	2480	2e-24	2157 - 2216	100	60 / 60	minus	ABC04206
JLOC1	JLOC1_43247.1	2506	8e-25	2063 - 2122	100	60 / 60	minus
Harvest21	ABC04206	2046	3e-25	1770 - 1829	100	60 / 60	minus	ABC04206
Harvest35	U35_28015	266	3e-25	141 - 200	100	60 / 60	minus
Harvest35	U35_14079	2090	3e-25	1807 - 1866	100	60 / 60	minus

Contig Sequence (266 bp)

>U35_28015 266 Hv_44K_v2
GCTTGTCGCGGCCGAGGTACATGAGGTCGAACTTGTGGTCAATGCGGGAGAAGACCTCGA
CGACGCTAGTGGAGTTGGAGATCATGCAGACGGCCCTCTGCACCTTGGCCACGTCGCCGC
ATCCGCGTGGGTAAGTGCAGGCTAATGGATTTGCATGTAACTGCATGCAGTGCCGCTGGT
TAAGGTTTGAGCTTTGGTTAATTTGTGCTGGTGTTGTAGCAGTTGTCATCATTATTAAGG
GTTTTAATCATAGACTACGTACCTCG

Homology of Contig U35_28015 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None