barSeed - Barley Seed Development Database

Probe CUST_34582_PI390587928

Source Contig U35_30330

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34582_PI390587928	Hv_44K_v2	TGACAACTCTTGAAACTGGAGCGACGCAGGTGTTCTGCTTTGCTGGGCGCAAAAGCAGCG	333	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_64485.2	3469	2e-24	433 - 492	100	60 / 60	plus	ABC30693
MLOC	MLOC_64485.1	1666	2e-23	442 - 499	100	58 / 58	plus	None
JLOC1	JLOC1_42348.1	1606	8e-25	433 - 492	100	60 / 60	plus
Harvest21	ABC30202	506	3e-25	334 - 393	100	60 / 60	plus
Harvest35	U35_30330	506	3e-25	334 - 393	100	60 / 60	plus

Contig Sequence (506 bp)

>U35_30330 506 Hv_44K_v2
CAATCATCGCGAGCTAGCAAGCAAGTTCGGTGGCGATGGCCGATCGCGGCGGCAAGGCGC
CAGTATCGACACCGACTGCAGCCGCAGACGTGGACATCGATGCGGAGGTGGTCATCGTCG
GCGCCGGGATCGCCGGGCTCGCGACCGCGCTGGGGCTGCGGCGGATCGGCGTGGGCGCGG
CCGGCGGCGGCGTGCTGGTGCTAGAGCGGCACGCCGAGCTGCGCTCCACCGGCGCCGCGC
TCACCATCTTCCCCAACGGCTGGTTCGCGCTCCGCGCGCTCGGCGTCGCGCACAAGCTCA
CCTCCCGCTACGATGCCTTCGAAACATCCCGAGTGACAACTCTTGAAACTGGAGCGACGC
AGGTGTTCTGCTTTGCTGGGCGCAAAAGCAGCGGCGACGTGAGAGTGAGACCGATGCATC
GGAAGGCGCTGCTGGAGGCGCTCGCAGAGGAGCTGCCTCCGGGCACCATCAGGTTCTCGT
CCAAGCTCGCCTCGATCGACACCGAG

Homology of Contig U35_30330 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None