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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_34579_PI390587928Hv_44K_v2CATGAACAAAGTTTCAGGCTTTCAGCCCAGAATAAAAACAGTTGTCTGTTTGCCAAAAAA2492GeneList: purple
MasterList: Starch_synthesis_Function_Probe_Module



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.3740.4880.9131.5821.1181.494
Raw 505.0021029.5911701.3834614.8371145.4271655.357



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_56800.445569e-221442 - 149610055 / 55minus ABC03541 ABC37852
MLOCMLOC_56800.636789e-22700 - 75410055 / 55minus ABC03541 ABC37852
MLOCMLOC_56800.1110189e-221358 - 141210055 / 55minus ABC03541 ABC37852
MLOCMLOC_56800.532599e-22264 - 31810055 / 55minus ABC03541 ABC37852
MLOCMLOC_56800.242329e-221113 - 116710055 / 55minus ABC03541 ABC37852
JLOC1JLOC1_36770.937895e-222160 - 221410055 / 55plus
JLOC1JLOC1_36770.840155e-222386 - 244010055 / 55plus
JLOC1JLOC1_36770.733655e-222304 - 235810055 / 55plus
JLOC1JLOC1_36770.639335e-222304 - 235810055 / 55plus
JLOC1JLOC1_36770.526785e-221049 - 110310055 / 55plus
JLOC1JLOC1_36770.444695e-223066 - 312010055 / 55plus
JLOC1JLOC1_36770.346955e-223066 - 312010055 / 55plus
JLOC1JLOC1_36770.240145e-222953 - 300710055 / 55plus
JLOC1JLOC1_36770.144685e-222839 - 289310055 / 55plus
Harvest21ABC035436963e-25626 - 68510060 / 60plus
Harvest21ABC0354118623e-251792 - 185110060 / 60plusABC03541
Harvest35U35_1604025633e-252493 - 255210060 / 60plus



Contig Sequence (2563 bp)

>U35_16040 2563 Hv_44K_v2
TCTGGATCCCAAGTTCGCCGGCTTCAAGGATCACTTCAGTTACAGGATGAAAAAGTACCG
TGACCAGAAACATCTGATTGACGAACACGAGGGAGGCCTTGAAGAGTTCTCTAAAGGCTA
TTTGAAGTTTGGGATCAACACAGAAAATGATGCAACTGTGTACAGGGAATGGGCCCCTGC
AGCAAAGGAAGCACAGGTTATTGGTGACTTCAACAACTGGAATGGCTCTGGGCACAGGAT
GACGAAGGATAATTTTGGTGTTTGGTCAATCAGGATTTCCCATGTCAACGGGAAACCTGC
CATCCCCCATAATTCCAAGGTTAAATTTCGATTTCACCGTGGAGATGGAGTATGGGTTGA
TCGGATTCCTGCATGGATTCGTTATGCAATTGCTGATGCCTCTAAATTTGGAGCTCCATA
CGACGGTGTTCACTGGGATCCACCAACTAGTGAAAGGTATGTGTTTAAGCATCCTCGGCC
TCAGAAGCCAGATGCCCCACGTATATATGAGGCTCATGTCGGGATGAGTGGTGAGAAGCC
TGAAGTAAGCACATACAGAGAATTTGCAGACAATGTGTTGCCACGCGTAAAGGCAAATAA
CTACAACACAGTTCAGTTGATGGCAATCAAGGAACATTCATATTATGCTTCTTTTGGGTA
CCATGTGACGAATTTCTTCGCGGCTAGCAGCAGATCAGGCACGCCAGAGGATCTCAAATA
TCTTGTTGACAAGGCACATAGTTTAGGGCTGCGTGTTCTGATGGATGTTGTCCATAGCCA
TGCGAGCAGTAATATGACAGATGGTCTAAATGGCTATGATGTTGGGCAAAACACACAGGA
GTCCTATTTCCACACAGGAGAAAGGGGCTATCATAAACTGTGGGATAGCCGCCTGTTCAA
CTATGCCAACTGGGAGGTCTTACGATTTCTTCTTTCTAATCTGAGATATTGGATGGACGA
ATTCATGTTTGATGGCTTCCGATTTGACGGGGTAACATCCATGCTATATAATCACCATGG
TATCAATATGTCATTCTCTGGAGATTACAAGGAATATTTTGGTTTGGATACTGATGTAGA
TGCAGTTGTTTACATGATGCTCGCGAACCATTTAATGCACAAACTCTTGCCAGAAGCAAC
TGTTGTTGCGGAAGATGTTTCAGGCATGCCAGTGCTTTGTCGGTCAGTTGATGAAGGTGG
GGTAGGGTTTGACTATCGCCTGGCTATGGCTATACCTGATAGATGGATTGACTACTTGAA
GAACAAAGATGACCTTGAATGGTCAATGAGTGGAATAGCACATACTTTAACCAACAGGAG
ATATACGGAAAAGTGCATTGCATATGCTGAGAGCCATGATCAGTCTATTGTTGGCGACAA
GACTATGGCATTTCTCTTGATGGACAAGGAAATGTATACTGGCATGTCAGACTTGCAGCC
TGCTTCACCTACAATTGATCGTGGCATTGCACTTCAAAAGATGATTCACTTCATCACCAT
GGCTCTTGGAGGTGATGGCTACTTGAATTTTATGGGTAATGAGTTTGGCCACCCAGAATG
GATCGACTTTCCAAGAGAAGGCAACAATTGGAGTTATGATAAATGCAGACGCCAGTGGAG
CCTCGTCGACATTGATCACCTACGATACAAGTACATGAACGCATTTGATCAAGCAATGAA
TGCGCTCGACGACAAATTTTCCTTCCTATCATCATCAAAGCAGATTGTCAGCGACATGAA
TGAGGAAAAGAAGGTTATTGTATTTGAACGTGGAGATCTGGTTTTCGTCTTCAATTTCCA
TCCCAATAAAACCTATGATGGTTACAAAGTCGGATGTGACTTGCCTGGGAAGTACAAGGT
AGCTCTGGACTCCGATGCTTTGATGTTTGGTGGACATGGAAGAGTGGCCCATGACTCGGA
TCACTTCACATCACCTGAAGGAATACCGGGAGTACCCGAAACAAACTTCAACAACCGCCC
TAACTCATTCAAAATCTTGTCTCCACCTCGTACCTGTGTGGCTTACTATCGCGTCGAGGA
AAAAGCGGAAAAGCCTAAGGATGGAGGAGCCGCTTTTTGGGGGAAAACTGCTCCGGGATA
CATCGATGTTGAAGCTACTGGCGTCAAAGACGCAACAGATGGGGAGGCAACTTCTGGTTC
TGAAAAGGTATCAACAGGGGATGGTTCCGTCAAGAGGGGAATTAACTTTGTCTTCCGGTC
ACCTGACAAAGACAACAAATAAGCACCATATCAGCGCTTGATCAGGACCGTCTACTGCCG
CTCCTTGTAATACCTATACTTTTACTAGTAGTAGCAGTATTATCGAGCTGTGTAAACTGG
AGATTCTGTCTTGGACCTGGCTGAGGTTACCTTACTATGCAAAGTTGCAAACTGCATGAA
TAGCTCTCTAGTAGAAAGATAAATAAGCGGTGATGATGAGGGTCTGAGTCTGGCTATATG
AGCCAAATATGCGCCGACCCGAGTCCTCCTGTCATGAACAAAGTTTCAGGCTTTCAGCCC
AGAATAAAAACAGTTGTCTGTTTGCCAAAAAAAAAAAAAAAAA



Homology of Contig U35_16040 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os06g51084.87560.0protein|1,4-alpha-glucan-branching enzyme, chloroplast precursor, putative, expressed
Brachypodium v1_2Bradi1g29850.18300.0
Arabidopsis v10AT5G03650.18050.0| Symbols: SBE2.2 | starch branching enzyme 2.2 | chr5:931924-937470 FORWARD LENGTH=805