barSeed - Barley Seed Development Database

Probe CUST_34571_PI390587928

Source Contig U35_16044

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34571_PI390587928	Hv_44K_v2	CGAGTGTTGTAGAGATGGATAGATCCTGTTTTATCTGATGATGTGTGTTCTATTCAAAAA	1406	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_61037.3	2467	9e-22	1604 - 1658	100	55 / 55	plus	ABC04518 ABC11349
MLOC	MLOC_61037.1	2173	9e-22	1459 - 1513	100	55 / 55	plus	ABC04518 ABC11349
JLOC1	JLOC1_39850.1	2206	5e-22	1456 - 1510	100	55 / 55	plus
Harvest21	ABC04518	802	3e-25	730 - 789	100	60 / 60	plus	ABC04518
Harvest35	U35_16044	1517	3e-25	1407 - 1466	100	60 / 60	plus

Contig Sequence (1517 bp)

>U35_16044 1517 Hv_44K_v2
GGAAGCGGTAGCAAAGATTCCGATGCAGGTTTGTGAACACGCCCGCAGGCCCAAATCCGG
AGACATGGCAAGCGCGCCCCCCGCCGCGCCGCCCCGCCGCGTGGTGGTCTGCGGCGGTGG
CGTTGTCGGCGCTTGCACGGCGTATTTCCTCTCCACCCACCCCGCCTTCCCCACCGTGCC
GACGCTTGTCGAGAAGTCCTCCCCCGCTTGCGCTGCCTCAGGCAAGGCGGGCGGCTTCCT
GGCCCTCGACTGGAGCGACTCCAACCCCGCACTCTCGGCGCTGGCGCGCGCATCCTTCGG
CCTCCACCACCGCCTCGCTGCTGCCCTCGACGGCGCCAACGCGTACGGTTTCCGCCCTGT
CCACACCCTCTCCATCTGCCTCCCCTCTCAGCCGGAGGAGCCCCTCTCACCGCACCCACT
CCTCCCTTCCTGGGTCGACCCCTCTGCCTCCGCCGCGCCACCACGCCAGCTCGGAACTCC
GGACACCACCGCGCAGGTCCATCCGGGCCTCTTCACCAAGGCCGTCCTCGCCGCGTCCGG
CGCCGAGGTGGTCATCGGCGAGGTGGAGCGCGTGGTGGTCCGCCAAGGGGAAGGGCGTGT
GGTCGGCGTTGCGGTGAAAGGGCGCGGTGTGGTGGACGCGGATGCCGTGGTGCTCGCCCT
CGGCCCTTGGTCTGGGCGTTTCGAGATGGTCAAAGAGGTGTTGGACGTGTCCGGGCTCAA
GGCGCACAGCATCGTGCTCCGGCCGCGCAACCCCGACAAGATAACACCGCACTGCCTGTT
CCTGAGCTACCAGCCGGAGCCCGGCGCCAAGATGCTCGACCCGGAGGTCTACCCGCGCCC
CACGGGGGAGGTGTACATCTGCGGAATGAGCAAGGACGAGCAAGTTCCAGATGATCCGGC
AACGATTGCCGGGGAGCCTGACTCCATTGCAATGCTTCATAAGATTGCTGGGAGGGTGTC
CAGCCAGCTCAAGACAGAGGAGGGCGCAGAGGTAGTCGCGGAACAGGCCTGCTACCTCCC
GTGCACCGATGACGGGCTGCCGGTCATTGGGGAAATGCCCGGGGTGAAGGGATGCTACGT
TGCAACCGGGCACAGCTGCTGGGGGATCCTCAATGCTCCAGTTACCGGTGCAGCACTCGC
CGAGCTCATCCTCGATGGGCAGGCCAAGATCGTTGATCTTGCGCCCTTCAGCCCGGCAAG
ATTTCTCAACAACAAGAAGAGCAGGCGCGGAGTGTAATGTGATCCGAGGTTCCTGCCAAA
CTTGGCAACCGAATAAAAAGATACTCCTACGTATCCTCGCTTGTAACCTGTCCGAGGAGG
GGACACCAAATCAAATAATGTACGGATAAATAAACCTACACCAAATCAAATAATGTACGG
ATAAATAAACCTTCAACACTTACTGTCGAGTGTTGTAGAGATGGATAGATCCTGTTTTAT
CTGATGATGTGTGTTCTATTCAAAAAAAAAAAAAAAAATGTTCTATTCCCTCTGTTCTTA
AATATTTTTATTGTTTA

Homology of Contig U35_16044 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g06080.1	392	0.0	protein\|FAD dependent oxidoreductase domain containing protein, expressed
Brachypodium v1_2	Bradi1g57360.1	387	0.0
Arabidopsis v10	AT5G67290.1	406	5e-103	FAD-dependent oxidoreductase family protein \| chr5:26848419-26849755 REVERSE LENGTH=406