barSeed - Barley Seed Development Database

Probe CUST_34568_PI390587928

Source Contig U35_30338

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34568_PI390587928	Hv_44K_v2	ATCTTCTGTAAAGACATTTTGTTCATCTTCTCGACCCTGTGGGCATGTCATTGATCATGC	315	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364552	2254	2e-24	1852 - 1911	100	60 / 60	minus	ABC30225
MLOC	MLOC_15175.1	1823	2e-24	1240 - 1299	100	60 / 60	minus	ABC30225
JLOC1	JLOC1_10394.1	1715	8e-25	1229 - 1288	100	60 / 60	minus
Harvest21	ABC30225	378	3e-25	316 - 375	100	60 / 60	plus	ABC30225
Harvest35	U35_30338	378	3e-25	316 - 375	100	60 / 60	plus

Contig Sequence (378 bp)

>U35_30338 378 Hv_44K_v2
TTTTTTTTTTTTTTTTTACATATCTCAACTGCACCATCATGAACGAGGGTCTGCAATACA
ATCAATACTGATTGTGCTATCAACACCAAGTAAAGAAAATAAGGGGCAATTTCTCACAGG
CGTAAGCACTGGGTATTCTACAACTGGACTTTCCGAGCAAAAGGAATTAAAAATATATCA
TGTTACTACATGATACCTGGAACAACCTTTTCTGAATGCCACCGTGATTTACTTCAGAAA
TTGCTGATGACAAGTAAAACAACAATCACCCCAACTATCATTGCCACCAGCAACAAGCAA
TTTTTCTGATCCCACATCTTCTGTAAAGACATTTTGTTCATCTTCTCGACCCTGTGGGCA
TGTCATTGATCATGCTGG

Homology of Contig U35_30338 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None