barSeed - Barley Seed Development Database

Probe CUST_34564_PI390587928

Source Contig U35_16048

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34564_PI390587928	Hv_44K_v2	GTTCCATTTGTTTTATGTCTTACACGCAATAAAAAGGACATGGCACTGTTTCTTGCTAAA	1541	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.865	1.744	1.307	0.601	0.187	0.170
Raw	604.921	883.644	580.533	406.665	44.943	46.778

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_16048	1615	3e-25	1542 - 1601	100	60 / 60	plus

Contig Sequence (1615 bp)

>U35_16048 1615 Hv_44K_v2
TACAGTACAAACTTGCAATGCTAACACTAAGATAACTCCTGGTAGTCACACACCTCAAGA
GGTGGCCCCTGATGCCTATGTTGTATTCTCTTACGACGTTACCTTTGAGGCTAGTGAGAT
CATATGGGCATCTCGCTGGGACGTCTACCTTCTCTCTAGCGACAGCCAAATCCACTGGTT
TTCTATCATTAACTCCTTGATGATTGTCCTTTTCCTTTCTGGCATGATAGCCATGATTAT
GATGAGGACCCTTTACAAGGACATAGCAAACTATAATCAGCTTGACAATCAGGAGGAAGC
CCAAGAAGAAACTGGATGGAAGTTAGTGCATGGTGATGCCTTCAGGCCTCCTGTTCATTC
AGGCCTTCTTTGCGTTTATGTTGGAACTGGTGTGCAGTTCTTTGGCATGACAGTGGTAAC
CATGATGTTTGCGCTACTTGGATTCTTATCCCCCGCGAACCGTGGAGGACTCATGACGGC
TATGGTCCTTCTGTGGGTTTTCATGGGTGTATTGGCGGGTTACACGTCGTCTCGCCTCTA
CAAGATGTTCAAGGGCACTGAATGGAAGAAGATTACCCTCAAAACTGCCTTCATGTTTCC
TGGTATAATCTTTGGGGTCTTTTTCGTCCTGAATGCCCTTATCTGGGGTGAGAAATCATC
TGGTGCAGTTCCTTTTGGGACAATGTTTGCTCTGGTCCTTCTCTGGTTTGGCATCTCCGT
GCCACTGGTCTTTGTTGGAAGTTTCTTGGGATTCAAGCAGCCAGCCATTGAGGACCCAGT
CAAGACAAACAAGATTCCCAGGCAAATTCCCGAGCAAGCATGGTACCTGCAGCCAGCTTT
CTCGATACTTGCGGGTGGCATATTGCCATTTGGTGCTGTCTTTATTGAGCTCTTCTTCAT
CCTCACATCTATCTGGCTGAACCAGTTCTACTACATCTTCGGGTTCCTCTTCATAGTCTT
CGTCATTCTGCTGGTAACCTGTGCTGAGATCACAATTGTGCTCTGCTACTTCCAGCTGTG
CAGTGAGGACTACCACTGGTGGTGGAGGGCATACCTGACCGCAGGCTCCTCAGCTCTATA
TCTATTCGCTTATGCTATCTTCTACTTCTTCAACAAGCTGGAGATCACAAAGCTTGTTTC
AGGCATTCTCTACTTTGGTTACATGCTGATCATTTCTTATGCCTTCTTCGTCCTGACTGG
CACCATTGGCTTCTATGCTTGCTTCTGGTTTGTGAGGAAGATCTATGCTTCTGTGAAGAT
CGACTGATATAGCAACTTTCAAGATAAGTTTCCCGTCTGCTTCTAGAGCATATCCCGTAC
AAGGTTTTCTTGCGATATCATACATGGTGCTGAGAACTGGGATTTGAGATGGGATTCCAT
GGTTTTGGTAGAATATGTGTAGCCTGGTAGGAGTAAGAATCACCGGATGTTCACGGATGT
TGAAGAGAGAATTTGATACTCGTCGCAGATTAGCATGTCTTGTGTAATTCTAAAAGTATC
GAGTGCTCCTGTACTGTTTGGGATCTTGATTGACCATGTCTGTTCCATTTGTTTTATGTC
TTACACGCAATAAAAAGGACATGGCACTGTTTCTTGCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_16048 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os06g37160.1	643	protein\|transmembrane 9 superfamily member, putative, expressed
Brachypodium v1_2	Bradi1g37590.1	638
Arabidopsis v10	AT3G13772.1	641	\| Symbols: TMN7, AtTMN7 \| transmembrane nine 7 \| chr3:4521712-4524394 REVERSE LENGTH=641