- Probe CUST_34563_PI390587928
- Source Contig U35_42311
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_34563_PI390587928 | Hv_44K_v2 | CACGTTTGGTTCCTTAATGACCTGAATGAGTGGGTTTTGAAGCATGACATGGATATTTTC | 585 | GeneList: green MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.128 | 0.867 | 1.128 | 0.975 | 0.302 | 0.262 |
Raw | 133.294 | 161.108 | 180.702 | 255.074 | 26.604 | 25.678 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK374664 | 3570 | 2e-24 | 1065 - 1124 | 100 | 60 / 60 | plus | ABC07554 |
MLOC | MLOC_54548.4 | 2029 | 7e-23 | 869 - 928 | 98 | 59 / 60 | plus | ABC37915 |
MLOC | MLOC_54548.2 | 1812 | 7e-23 | 893 - 952 | 98 | 59 / 60 | plus | None |
MLOC | MLOC_54548.3 | 1341 | 7e-23 | 893 - 952 | 98 | 59 / 60 | plus | None |
MLOC | MLOC_54548.1 | 1422 | 7e-23 | 896 - 955 | 98 | 59 / 60 | plus | None |
JLOC1 | JLOC1_35113.2 | 1730 | 4e-23 | 896 - 955 | 98 | 59 / 60 | plus | |
JLOC1 | JLOC1_35113.1 | 1382 | 4e-23 | 896 - 955 | 98 | 59 / 60 | plus | |
Harvest21 | ABC37914 | 648 | 3e-25 | 586 - 645 | 100 | 60 / 60 | plus | |
Harvest35 | U35_42311 | 648 | 3e-25 | 586 - 645 | 100 | 60 / 60 | plus |
Contig Sequence (648 bp)
>U35_42311 648 Hv_44K_v2 GGCAATGGTCTCCTCTTGCTCCGTCACTGCGTGGCCAACCCTGCCACGCAGCAGTGGGCA CCCCTGCCACCGGACCCGGCCCTGCCCCAACCCCCACCTCCAGGCATGGATTTTATCATA CACTCTTACCTCGTGTTTGACCCCATCCTGTCGCCCAACCATTTCGACTTGTTCATAATG CCCCAAGTTCCTTTCCAACTGGACCCCGACGCCGAATGTGAGCCAGTTGAATGGCCACCG TCCGCGTTCATCCTTTCTGTGTTTTCATCCAAGATTGGTTCATGGGAGAACCGTACATTT GATCGGGAAGGGGAAGCTGCATGGACCATGCCTGGCATGGATCCGGAAATAAGACGGTCT TGCAATGAACGTCAGTCTGCCTACTGGAGAGGATCGCTCTATATATGTTGCTCCAACTGT TTTGTTATGAGAATATCGCTGTCAGACAACAGGTATCAAGTAATAAAACTGCCACCGCCA ATATTTTCCAAACACGGTTCCAGAGATCGTCAACAGTTTTACCTTGGAAAATCTACCAAG GGGATATATTGNGCATCAGTATTCAGCTTATATAGGTCTCTCCTTCACGTTTGGTTCCTT AATGACCTGAATGAGTGGGTTTTGAAGCATGACATGGATATTTTCCCC
Homology of Contig U35_42311 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |