barSeed - Barley Seed Development Database

Probe CUST_3455_PI390587928

Source Contig U35_3411

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3455_PI390587928	Hv_44K_v2	GATGTGGTGGTCGTTTATTGGTTGATGGAAATAACATAATTACCTTTTGTTTCTCCTTCA	1822	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_57586.1	3135	2e-24	2998 - 3057	100	60 / 60	plus	ABC08476
MLOC	MLOC_57586.2	3083	2e-24	28 - 87	100	60 / 60	minus	ABC08476
MLOC	MLOC_57586.3	3104	2e-24	28 - 87	100	60 / 60	minus	ABC08476
JLOC1	JLOC1_37346.3	3085	8e-25	2997 - 3056	100	60 / 60	plus
JLOC1	JLOC1_37346.2	3080	8e-25	2992 - 3051	100	60 / 60	plus
JLOC1	JLOC1_37346.1	1799	8e-25	1711 - 1770	100	60 / 60	plus
Harvest35	U35_3411	1931	3e-25	1823 - 1882	100	60 / 60	plus

Contig Sequence (1931 bp)

>U35_3411 1931 Hv_44K_v2
GGTGGTAGAATTATGGCATTTATAGGTGGTCCATCTACTGAGGGACCTGGTTCTATAATA
TCGAAGCCGTTATCTGATCCAATTCGTTCACACAAAGATCTTGATAAAGGTTCTGCTCCA
CTTTATAACAAAGCCGTTAAATTCTACGAGGAGATTGGAAATCAACTCGTGCATCAAGGG
CATGTGCTCGATCTATTTGCATGTGCACTTGACCAGGTTGGTGTCGCTGAGATGAAGGTT
GCAGTGGAGAGAACTGGGGGAATAGTTGTGCTTGCAGAAAGTTTTGGCCATTCTGTTTTT
AAAGATTCACTTAGACGCATTTTTCAGTCAAGCGATAGTGACCTTGGCTTATCGTTCAAT
GGCATATTTGAGATCAACTGCTCCAAGGATGTCAAAGTTCAAGGCATCATTGGACCTTGT
ACTTCCCTGGAGAAGAAAGGCCCTCTATCCTCAGATACAGTTGTAGGTCAGGGGAACACT
AGCGCTTGGAAGATGTGTGGTCTAGATAGGAAAACATCACTATGCCTAGTATTTGATATG
GCCAAAAAAGATGCCCCGGACGCAATTGGTCAATCACAAAATAATCTGTTCTACTTCCAG
TTCTTAACCTATTATCAGCATCATGATGGGCAGATGAGATTGCGAGCGACTACACTTTCG
AGAAGATGGGTTGCTGGTTCTGGCAGTGTGCAGGAGCTAATAACTGGCTTTGACCAAGAG
GCAGCAGCAGCAGTCATGGCACGCTTGGTCTCATTTAAGATGGAAGCTGAGGTTGATTTT
GATCCAGTAAGATGGCTTGACCGAGCATTGATTAGTCTATGTTCTAAATTTGGAGACTAT
CAGAAGGAAGCACCTTCATCTTTCAGTCTGTCCCCACGTCTATCAATTTTTCCACAGTTT
ATATTTAATTTGAGACGTTCTCAGTTTATTCAGGTTTTCAACAATAGTCCAGATGAAACT
GCATATTTCAGGATGATGTTAAACAGAGAGAATGTGGCGAATGCAGTTGTGATGATCCAG
CCTTCACTTATATCGTATTCATTTCAGTCTGGTCCTGAGCCTGTTCTATTGGATGTAAGC
GCAATTGCTGGTGACAGGATACTTTTGTTGGATTCTTATTTTACCGTTGTCATATTCCAT
GGGATAACGATTGCACAGTGGCGAAAGGCTGGTTACCAACATCAAGAAGGCCACGAGGTG
TTTGCCCAGTTGTTGCAAGCCCCACAGGAGGAAGCTGATTCAATAATCAAGGAGCGCTTT
CCTGTGCCTCGTTTGGTTGTGTGCGATCAATATGGTTCTCAGGCCCGATTCTTGCTGGCA
AAGCTGAACCCATCCGTGACATATGACTCCGACAATCCTCCGCCCCCCGGGGGGGATATG
ATATTCACAGATGATGCGAGCTTCCAGGTCTTCATGGAGCATCTCCAGCGGTTGGCAGTT
CAGTAGATCGTGGGCGTGCAGTAATTTTGCACCAATGGCCTCTTCTCTGATGTACAGCAA
AGAAAACTTTTTCGTGTGTGTATCACTGTTACAGTACTGTAGACTGACATACCGTTGTTA
GCTCTCCATCTGTACATTGCCATGGGACATGGACCAAGGTTTATGCCATATAGCCCGAGA
CGGGACATCCATAAATTGTGTTGTTAGCTCAACATATGGTTGATCATTGCCAACACCAAA
GGAGATCATCATCATCTAGGTGTTCAAACTTACTGGTGAAGAGGATTCTTAAGTCTCATG
TGTTACTAGCGTGTCGTGATTGCTGCGTCTACTCGGTTTGTTGGTGGCATGTGTTTGCTG
CAAAAATGTGCAACAAATTGATGATGTGGTGGTCGTTTATTGGTTGATGGAAATAACATA
ATTACCTTTTGTTTCTCCTTCATTAGTCAATACCAATGTTGGTTTTCTGGACACAAAAAA
AAAAAAAAAAA

Homology of Contig U35_3411 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g36994.1	764	protein\|protein transport protein, putative, expressed
Brachypodium v1_2	Bradi3g38100.1	764
Arabidopsis v10	AT2G21630.1	761	Sec23/Sec24 protein transport family protein \| chr2:9250346-9253829 FORWARD LENGTH=761