- Probe CUST_34556_PI390587928
- Source Contig U35_28022
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34556_PI390587928 | Hv_44K_v2 | CAATCTTGTTGTTTATGAGCAATGTTCCCAATCAGTGAATCAGATGAGCGTTGTAAAAAA | 284 | GeneList: yellowgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.659 | 3.225 | 2.103 | 1.267 | 0.401 | 0.370 |
| Raw | 509.662 | 3937.134 | 2063.560 | 1996.336 | 220.659 | 222.506 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| JLOC1 | JLOC1_36670.1 | 1514 | 6e-21 | 898 - 950 | 100 | 53 / 53 | plus | |
| Harvest35 | U35_28022 | 355 | 3e-25 | 285 - 344 | 100 | 60 / 60 | plus |
Contig Sequence (355 bp)
>U35_28022 355 Hv_44K_v2 ACACCGCCGCATTCAGCGACGAGAACCCCAACGCCTGCTCCGTCATGTAGCCTCCCACTC TCCCTTGTCTCCGGCCGCCCGGCCACCGGCGACCTTTTCTAGTTCGCCTGCTCTGCTCTG CTCTGCTCATCCATGGCGGCGTTGGGTGGGAGGGGTCTCTAGCTAGACAGTTCGCTGGCG TTCTCCTGTGTTTTCAAAAAAACTAGACTAGACTAGTAGAAGATATGTATTCTTGCTTCG GTTTGGTGTAAGATATGTGGGATTCGGTGAGGAGGAAGCTCCATCAATCTTGTTGTTTAT GAGCAATGTTCCCAATCAGTGAATCAGATGAGCGTTGTAAAAAAAAAAAAAAAAA
Homology of Contig U35_28022 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |