barSeed - Barley Seed Development Database

Probe CUST_3454_PI390587928

Source Contig U35_3412

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3454_PI390587928	Hv_44K_v2	AGAAAACATCGCTTTGCTTTGTATATGACATCTCCAGAAAAGCTGGCCCAGATTCAGGCG	1759	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250454.1	2705	2e-24	1590 - 1649	100	60 / 60	plus	ABC08476 ABC12555 ABC12556
MLOC	MLOC_10655.1	2867	2e-24	1095 - 1154	100	60 / 60	minus	ABC08476 ABC12555 ABC12556
JLOC1	JLOC1_6986.1	3033	8e-25	1675 - 1734	100	60 / 60	plus
Harvest21	ABC08477	1909	3e-25	1760 - 1819	100	60 / 60	plus
Harvest35	U35_3412	1909	3e-25	1760 - 1819	100	60 / 60	plus

Contig Sequence (1909 bp)

>U35_3412 1909 Hv_44K_v2
GACCCGGTGTCCACAACAACCGGAAGCCGAGTCAGGGCAGGCCACGCAAGCAGGCCTCGT
GCGAGCCGTCCGATCCGGCCTCGCTTCCGACGCGCCCATCCGAGCCCTTCATCACCGAAC
ATCGGCCCCACAAGACCTCAGTCCGGCGCCACCTCACCCCTCTCCTTCTTGTCCCCCGAC
TGGAGAGCCCCCTCCCGAGTCCCGATCGCATCGCGCGCTCCACCGTGCCGCCTCCATCGC
CTCCTGCCCCAACGCCGGCGACGGTGCGGCTGGCCGGCACTAGGCGGTGACTTACCCTTC
TGTTTCTCGCGGCGCGGCAGTGTTCGCGAGTGATCCGCCGGTTGGGTATCATTTCACTTG
CAGAGGCCTGACACAAATAGCATACATAAGGCTGCTGTATACAAAATGTCTGAGTTCCTC
GAGCTTGAGGCTCTGGATGGGATAAGGATGCCATGGAACGTTTTTCCAGGCACAAAGGAG
GATGCTGTGAGCTGCGTCGTCCCTGTTTCTGCCATCTATACCCCTCTCAAGTCAATTCCT
GATATGCCAGTAGTCCCATATTCTCCCCTTCGCTGCCGCATGTGTCGTTCAATCCTCAAT
CCTTTCTCCAGAGTAGACTATAATGCGAAGATCTGGCTCTGTACATTCTGCTTTCAGCGC
AATCAATTCCCTCAACACTATTCCTCGATCTCAGAAAACAATCTCCCTCCAGAACTCTTT
CCTCAGTATACCACAATTGAGTACATATCCACTGCAGAAACAGGTCCTGTAATGCCTCCT
GTTTTCATCTTTGTTGTGGATACTTGCATCATCGAGGAAGAAATTGGTTATTTGAAGTCT
GCTCTGGCACAGGCTACTGAGCTATTGCCAGATAATTCCCTTATTGGGTTCATTACTTTT
GGGACATATGTACAGGTGCATGAATTGGGTTTTGGTTTGTTGCCGAAGTCATATGTGTTC
AAGGGAACAAAGGAGGTCAGCAAGGAACAAATATTGGAGCAAATGTGCTTCTTTGCAGGC
AAACAAAAGCCCACCACAGGGGTAATAGCTGGAACTAGGGATGGTCTTTCATCAGAGAGC
ATCTCTAGATTCCTTGTGCCTGCTTCGGAGTGCGAGTTTGTACTGAACTCAGTTATTGAA
GAGCTGCAAAAGGACCCTTGGCATATTCCAGCTGATCAACGTGCATCAAGATGCACTGGA
GCTGCATTAAGTGTGGCGGCCAGTCTCCTGGGGGTTTGTGTCCCTGGATCAGGTGCTAGG
ATCATGGCATTTGTTGGTGGTCCATCTACAGAGGGACCTGGTTCTATTGTATCGAAATCC
TTAGCAGAGCCAATTCGCTCACACAAAGACCTCGATAAAGACTCGGCTCCACTTCATGAT
AAAGCTGTTAAGTTCTATGATCAGATTGCCAAGCAGCTTGTGCACCAAGGACATGTGCTG
GATTTGTTTGCGTGTGCAGTCGATCAGGTTGGTGTTGCTGAAATGAAGGTTGCAATTGAG
AAGACTGGGGGAATTGTTGTGCTTGCTGAAAGTTTTGGTCACTCTGTTTTCAAAGACTCG
CTTCTCCGCATCTTTCAGTCAGCAGATAACGGCCTTGGATTATCATTCAATGGTATTCTC
GAGATTAACTGCTCAAAAGACTTAAAGATTCAAGGCATTATTGGGCCTTGTACTTCCCTG
GAGAAGAAAAGTCCTCTGTCTGCAGATACTGTTATTGGTCAGGGAAACACTAGTGCTTGG
AAAATGTGTGGTCTTGACAAGAAAACATCGCTTTGCTTTGTATATGACATCTCCAGAAAA
GCTGGCCCAGATTCAGGCGCTCAACAGACAGGCGAACAGCTCTACCTTCAATTTGTAACC
TATTATCAGCATCATGAGGGCCAGATGAGATTGCGAACTACTACGATCT

Homology of Contig U35_3412 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os08g36994.2	722	protein\|protein transport protein, putative, expressed
Brachypodium v1_2	Bradi4g32280.1	763
Arabidopsis v10	AT2G21630.1	761	Sec23/Sec24 protein transport family protein \| chr2:9250346-9253829 FORWARD LENGTH=761