barSeed - Barley Seed Development Database

Probe CUST_34532_PI390587928

Source Contig U35_30348

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34532_PI390587928	Hv_44K_v2	TTGATGGCGTCGACTTATGTTGACGTAAATTGTTTTGATTCTTTTTCATTCAGGGATCTG	360	GeneList: orange MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.197	0.927	1.620	1.756	0.574	0.758
Raw	4.469	47.245	66.128	113.343	12.898	19.066

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC30241	614	3e-25	361 - 420	100	60 / 60	plus
Harvest35	U35_30348	614	3e-25	361 - 420	100	60 / 60	plus

Contig Sequence (614 bp)

>U35_30348 614 Hv_44K_v2
ACAAGATCATAGCCGTCTGCGCAGACGACCCCGAGTACCACAACCTGAACCATCTCAGCG
AGCTCTCTCCTCATCGCCTGCAGGAGATCCGCCGCTTCTTCGAAGACTGTACGCATACCA
TTGCCTGCCTTATCTCGCGTTCCCACTGACCTTGTCATGTACGTAGTATCTTCAGACTTC
TAGTGTCTGATTCTTGGTTGGTGAAATCTTTCAGACAAGAAGAATGAGAACAAGGAGGTG
GCTGTCAACGACTTCCTCCCCGCGGACGACGCTCGTGCTGCCATCCAGCACTCCATGTAA
GTTCTCACCATTTTGGAGGATACTACAGTCTTGTGATTAAACTCTGAGACACCTCGGGGA
TTGATGGCGTCGACTTATGTTGACGTAAATTGTTTTGATTCTTTTTCATTCAGGGATCTG
TACGCCGAGTACATTATGCACAGCCTAAGGCGGTAGAGCGTGTACAATTACCTTATATTT
TTTTCCTTTGCCCTTCCTCCTATGGTGGGAAGCAAAGAAGATCCCCTCGAAGCATTTGGG
ATCTGATAAACACCCACTTTACGCGAGTTTGTATTTCCACATTCTCGCATTAGTTTGTAT
TGGCCATATTTTTC

Homology of Contig U35_30348 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None