barSeed - Barley Seed Development Database

Probe CUST_3452_PI390587928

Source Contig U35_3414

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3452_PI390587928	Hv_44K_v2	ATGCTGCCCAACTCAACCCGTTTACAATTGGTATGTTACCAAGCGGCTGTTTTTAAAAAA	1634	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.268	1.654	1.197	0.800	0.346	0.352
Raw	3782.313	7761.860	4867.960	5063.573	775.267	853.840

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54546.3	1487	3e-21	1427 - 1480	100	54 / 54	plus	ABC07755
MLOC	MLOC_54546.1	4128	3e-21	78 - 131	100	54 / 54	minus	ABC07755
MLOC	MLOC_54546.2	4125	3e-21	78 - 131	100	54 / 54	minus	ABC07755
JLOC1	JLOC1_35112.3	6486	2e-21	6091 - 6144	100	54 / 54	plus
JLOC1	JLOC1_35112.2	6489	2e-21	6094 - 6147	100	54 / 54	plus
JLOC1	JLOC1_35112.1	4759	2e-21	4364 - 4417	100	54 / 54	plus
Harvest35	U35_3414	1719	3e-25	1635 - 1694	100	60 / 60	plus

Contig Sequence (1719 bp)

>U35_3414 1719 Hv_44K_v2
TTGAGAAGCACAGGCAGGCTGTGAAGGAGGTGATTGAGCATTATTCTGGACAATCATCTG
AAATCCCGTCTGGATCAGCAGTAGAGGAGCAGTTCCGGTCGTATTTCCTCATGGCTAAAA
AAATGGAGGAGTCTCCTAGCCCGTTCCAAGATGGTTCAACTAGCCAGGCACCACCTATTG
AAACACCTACTGTCGATGCAGCTGCAACAGGGCGGCAGGTAACTACTCCGCCAAGGCCTG
CTCAAGTTAAAGTGATGGAGGAGAAAGCCGTTTCTTCTTTGCCCAAGCCAAGCACCGAAC
AACGTAGATCAAGAAGGGCGCTTGTTCGGCCTAGTCTTGAAAGAACTGAAGAGCCCCAGG
CTGATGCGTCTACACCAGCTGTAGATGGTTCTGCAGTACAGGAGAAAGGTGGCACGGCAG
CAGAACGAGGTTCGACAGTAGTTCAGGAAAAAGGTGGCCCATCACTGGAGCGTGAAACTT
CTGGCAGTGTGTCTGTATTGCCTTCTGGTCGCAAACGTCTCATGCCATCATCGCAGATGA
GAGATGATGCATCACATGGAGAGGCTAATGATGCAAATCCTCCATCAAAGAAACCTAAGG
AGGATCCTGCACAAAATTCCAGTGAGTTAAAAACTGATCAATCGGCCCCTGAAGATGTAA
CAACTGAGGCTCCTATGGTTATTTCGATGGACAACCAAGATGTGCAACAACAGCCTGGAG
AAGAGATGGGTACGGATCAGGGTTCCTTGCCAGTTGAAGAGGTTGAGGACATCAGGGATG
ACGAAGTGGGTAACAATGATGACATGGAAGAACATACAGGTGCATCAATGGACATTGAAG
GCCAGGATGCTGAAGTTAATATGGACAGTGATGCAGCTGCTGTGGAAGATGCGCCTCTTA
AGTCAGAGGCAGTAGTGGAATCATTCGATGAAGACCAGAAACTCGAAGATGCGAAGGAAG
AGGGCCAGATTACTACAGCCACCACCGACGCTGAAGATGAGAGGGAGGAGGGGGAGTTGC
CGGATGAACCCGAACAACAATCAGATAGTAGCCCATTGGATATTGGTGAGCAAGCAGGTG
ATGCTTTCAGGGCAGCATCTCCAGGTGGGCCGGCAGCAAAGAGCGATGCAGATATGTCAG
AGGAGATTGTAGAAGGTGATGGTACCGCTGAACGTGCTGAGGTGGAGCCAGACCAAAGCC
CTGTAATAGCACAATCAGGCGGAGCCGATGCATCACCAAGCAGAACCACAGATGCATCCC
CTGCACGTGAACCTTCCCCTTCAAACCCAGCCCATGCTGGTGCATCTTCTGAACAACAGA
ATCCCAGTACTGGAGCAGAGACTGTGGGTAGAACAATCAACTTGAGAACAAGCAGACCAA
CCAGACTTGTACGGACAACCACCCAGCCTTCCAGGGCTCGTTCTCGAGATGCTGGTGGGC
GCGGACCACTACGGGGACGTTCTCGGCGAGGTGGCCAGTAATAGTGAGTTAGAAAGAGTT
CAAGTCCTCGTTGCTAGAAACTCGTAGTTGTGTCTTTTTGGCCAGCTACATAGACTACTC
TTTGCCATTAACTACTGAGCTACTTTGTTGCCCGAGTAAAGCATTGCATGACTTGCAGCC
CGTCGAGTAGGCGTATGCTGCCCAACTCAACCCGTTTACAATTGGTATGTTACCAAGCGG
CTGTTTTTAAAAAAAAAAAACCCCAAAAAAAAAAAAAAA

Homology of Contig U35_3414 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g50790.2	678	2e-160	protein\|nuclear-pore anchor, putative, expressed
Brachypodium v1_2	Bradi3g59627.1	2070	1e-165
Arabidopsis v10	None