barSeed - Barley Seed Development Database

Probe CUST_3450_PI390587928

Source Contig U35_11842

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3450_PI390587928	Hv_44K_v2	GCATCTTGACAGAGATAAAGACATGCAGCTTCAATCTGTATGGGCAAAACTTAGGCGTAA	740	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363025	2901	2e-24	751 - 810	100	60 / 60	plus	ABC14601
MLOC	MLOC_25012.1	1865	2e-24	923 - 982	100	60 / 60	plus	None
JLOC1	JLOC1_17143.1	1404	8e-25	558 - 617	100	60 / 60	plus
Harvest21	ABC28276	675	3e-25	613 - 672	100	60 / 60	plus
Harvest35	U35_11842	803	3e-25	741 - 800	100	60 / 60	plus

Contig Sequence (803 bp)

>U35_11842 803 Hv_44K_v2
GACCGTGACCGGCGTCAACACACTTCGGCGCTGCCGCCCCCGCCGTCTCCACTTCGCCGC
CGAGGAAACGTGTCAGATCCCCTCGATTGCTCCGCCGCGGCCTACGTGCGGCAGCGCTCC
CCGGTGCCTCTGCGGCGGACTAAGCGTCGCCGCCCCGCGAAACCCTAGAACGCCGGAGCC
GCGTACGGCTCGTGTTTCCGGGCTCGCCGCTTGCTGCCGTCCATGTCCTCCCGGCCGCCG
GAGGCTGCGGGGGACGCTGGTGCCCCTTCATCCAGCGGTACTTTGCCTCAGGATATAAGT
GACGTGTCCAAATCTACAGCTGGTCAGCTGCAAGCAGCAGATCAGAAAGGAAGTGCCCAG
TCAAGCCAGCAGGCAGGGCTACCACGTATGAATCCATCAGATCAGTTGTCTCAACCAAAA
TCGGAAACTGGAGATTCAGAAAATGAGAACTTTATCAAACAGGAGGAACACTTTTACCAG
CCAGAACAAGAGCAGTCACGTTCTGAGAATCAACTGCAGCAGGCAGAAACAAATAGCTTC
CAGTTGGCAGAAAAAGGAACAGACTATGTTGCTCAACAGAGTTTGACAGGCTCCATGGAA
GATGCTGCTCAGCCTTCAGGAGATCAGCGGCATGTAAATCCAGTTGTTGGTCAGCAAGCA
CCTCATGGTGCGCAGGAAACAAGGAAGAGGGGATATCAGCCATCTATACCATTTAATATG
TTAATTCCAATCCTACAGGCGCATCTTGACAGAGATAAAGACATGCAGCTTCAATCTGTA
TGGGCAAAACTTAGGCGTAATGA

Homology of Contig U35_11842 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi3g50457.1	795	7e-72
Arabidopsis v10	None