barSeed - Barley Seed Development Database

Probe CUST_34508_PI390587928

Source Contig U35_46960

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34508_PI390587928	Hv_44K_v2	GGCAGCCGCCTTCGTCGACCTTACCATGGATGCTTCCACGAGCAACGAGTTCATGATCAT	491	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_77974.1	3986	2e-24	3552 - 3611	100	60 / 60	minus	ABC19794
JLOC1	JLOC1_51973.1	1020	8e-25	376 - 435	100	60 / 60	plus
JLOC1	JLOC1_51975.1	2652	8e-25	2218 - 2277	100	60 / 60	minus
Harvest21	ABC47678	551	3e-25	492 - 551	100	60 / 60	plus
Harvest35	U35_46960	551	3e-25	492 - 551	100	60 / 60	plus

Contig Sequence (551 bp)

>U35_46960 551 Hv_44K_v2
AAATAATTCTCACTAGAGGCCATGCTCTCGTCGCTCATGCAGCACTGCGACCCGCCGCAG
CGCCGGTTCCCGCTCGAGAAGGGCGTGCCGCCGTCGTGGTGGCCGCAGGGGACGTCCGAG
GCGTGGTGGCAGGAGGCGGTCGTGCCCGACGACCTGGCCCCGCCGCCGTACAAGAAGCCG
TACGACCTCAAGAAGGCGTGGAAGGTCGCCGTGCTCACCGCCGTCATCAAGCACATGTCG
CCCGACGTCGACAAGGTCCGCCGCCTCGTGCGGCAGTCCAAGTGCCTGCAGGACAAGATG
ACCGCCAGGGAGATCGTGACATGGCTCGCCGTGCTCAAGACGGAGGAGGAGCTCAGCCAC
AAGCTGCACCCCGGCGCCTGCCTTCCTCCGCGGCCCTCCGCCGGCGCGCTGTCGTTCGAC
GCCAGCTCCGGCGAGTATGACGTCTACTTCTTCGGCGAGGAGGCCGCTAACCAGATGAAG
GCACGCTCCGAGGCAGCCGCCTTCGTCGACCTTACCATGGATGCTTCCACGAGCAACGAG
TTCATGATCAT

Homology of Contig U35_46960 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g48630.2	594	2e-65	protein\|ethylene-insensitive 3, putative, expressed
Brachypodium v1_2	Bradi1g63780.1	651	1e-55
Arabidopsis v10	None