barSeed - Barley Seed Development Database

Probe CUST_34506_PI390587928

Source Contig U35_46962

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34506_PI390587928	Hv_44K_v2	AGCTCCAGCTGAGGTTGAGCTACTAGCTGTTGGTTTCTGCTTGTGTGCATGGGGGGACTC	507	GeneList: grey60 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.239	6.106	1.601	0.677	0.375	0.386
Raw	198.107	317.056	70.479	47.140	9.496	10.181

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest21	ABC47680	567	3e-25	508 - 567	100	60 / 60	plus
Harvest35	U35_46962	567	3e-25	508 - 567	100	60 / 60	plus

Contig Sequence (567 bp)

>U35_46962 567 Hv_44K_v2
CTCCCTGAAGGCGACCACCTACTACACCCGGCACAACGACACCGACATCAGGGTCCGGCT
GGTAGGGACACCCTCGCTGACACCAGCACCATCAGCCTCCCATTCAAGAACGGCAGAGCG
ATCGGGGACAGGGCGAACTCGATATGGCTCTACATTGTGCCGAGAGGGATGAGGAGCCTG
ATGAACTACGTCAAGAACAGGTACAACAGCCCACCGATCTACATCACCGAAAACGGGATG
GATGACAGCAACAGCCCCTTCATTGGCCTCAAGGACGCACTCAAGGACACCAAGAGGATC
AAGTACCACAACGACTACCTCACCAATCTGGCCGCCTCCATAAAGGAGGACGGGTGCGAC
GTGCGCGGCTACTTCGCGTGGTCTCTGCTGGACAACTGGGAGTGGGCGGCCGGGTACTCG
TCCAGGTTCGGGCTCTACTTCGTGGACTACAACGACAAGCTCAAGAGGTACCCCAAGAGC
TCGGTGCAGTGGTTCAAGAGCCTCCTCAGCTCCAGCTGAGGTTGAGCTACTAGCTGTTGG
TTTCTGCTTGTGTGCATGGGGGGACTC

Homology of Contig U35_46962 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g11420.1	522	5e-93	protein\|Os3bglu6 - beta-glucosidase/beta-fucosidase/beta-galactosidase, expressed
Brachypodium v1_2	Bradi1g70170.1	520	8e-96
Arabidopsis v10	AT1G26560.1	510	2e-76	\| Symbols: BGLU40 \| beta glucosidase 40 \| chr1:9178513-9181726 FORWARD LENGTH=510