barSeed - Barley Seed Development Database

Probe CUST_34505_PI390587928

Source Contig U35_46963

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34505_PI390587928	Hv_44K_v2	AGAGCAAGCATATGTTGATCTGTTGGACTCATCGAAACAGACACTTGGCTCCATGCTTGA	564	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.538	1.141	1.165	0.925	0.477	0.471
Raw	106.638	119.724	113.031	140.542	24.929	27.498

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363765	1731	2e-24	772 - 831	100	60 / 60	plus	ABC09605
MLOC	MLOC_5962.3	1016	2e-24	851 - 910	100	60 / 60	plus	ABC09605
MLOC	MLOC_5962.4	252	2e-24	118 - 177	100	60 / 60	plus	ABC09605
MLOC	MLOC_5962.2	1051	2e-24	876 - 935	100	60 / 60	plus	ABC09605
JLOC1	JLOC1_3872.2	1117	8e-25	871 - 930	100	60 / 60	plus
JLOC1	JLOC1_3872.1	970	8e-25	871 - 930	100	60 / 60	plus
Harvest21	ABC47682	629	3e-25	565 - 624	100	60 / 60	plus
Harvest35	U35_46963	629	3e-25	565 - 624	100	60 / 60	plus

Contig Sequence (629 bp)

>U35_46963 629 Hv_44K_v2
TCCGGAGGCCTGCAATTGAAAGAGAAGCCTTTGCTTCCCCTTCCCTCCTCGGCATCACTC
GCAAACCTAGCTACTTGCCGCCGCCGAGGACGAGATGGCGCCACTCGCACCCAAGCGCCG
CAAGGCGGTACCTTCCCCTCCCCTTTCGCAGGCTTCTTCCGACTCCGGCAGCGACTCCGA
TCTCAACCTCCACGACAACTCCGACCCAGAGGACGGCTTCTTCTCCTCAAGGAGCGCTGC
CAATGACGACGACCAAGATTTCTCCGCCAGCGACGAGGGGGGCGACCACGAGGAGGAGAG
CGACCATGAGGATGATGATGATGGTGAGATGGGGGAGCTCGAGCAGGAGTATCGCGCCCT
CCAGGCCAATCAACAAAGCATTATTCAGACCTTGAAACAGCACAGGGATGGCGATGTCTC
AAGAGGCCAGGCAGTCAAAAACCAAAAGGCGCTATGGGATAAGACCCTGGAAATGAGATT
CTTGCTGCAAAAGGCATTTACAACTTCAAACAAGCTTCCCAAGGATCCCACCAAGTCAAG
GTTCTGTGGTCATGAACAGGAGATAGAGCAAGCATATGTTGATCTGTTGGACTCATCGAA
ACAGACACTTGGCTCCATGCTTGAGCTGC

Homology of Contig U35_46963 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None