barSeed - Barley Seed Development Database

Probe CUST_34502_PI390587928

Source Contig U35_46966

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34502_PI390587928	Hv_44K_v2	CTTTCGGATGATCTCTCTTGTTGGTATTTTGCAATGATTTCAAATATCATACTCCTTTCG	57	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356208	916	2e-24	852 - 911	100	60 / 60	plus	ABC00093 ABC00181 ABC00395 ABC00652
MLOC	AK249729.1	1150	2e-24	988 - 1047	100	60 / 60	plus	ABC00093 ABC00181 ABC00395 ABC00652
JLOC1	JLOC1_29182.1	1631	8e-25	1213 - 1272	100	60 / 60	plus
Harvest21	ABC47686	544	3e-25	58 - 117	100	60 / 60	minus
Harvest21	ABC00181	1031	3e-25	950 - 1009	100	60 / 60	plus	ABC00181
Harvest35	U35_46966	544	3e-25	58 - 117	100	60 / 60	minus
Harvest35	U35_13935	1039	3e-25	958 - 1017	100	60 / 60	plus

Contig Sequence (544 bp)

>U35_46966 544 Hv_44K_v2
TTTTTTTTTTTTTTTTTACTCTTCTAATGAATCTTTAAAAAGACTTATATTTAGGAACGA
AAGGAGTATGATATTTGAAATCATTGCAAAATACCAACAAGAGAGATCATCCGAAAGGAA
ACATTTAACTGGGACATCATTACAAAAATACTGAGCTTGTCAAAGGCACATATTAGATTG
GAACAAATAATTCGTCTTAAGTATGAAATGGTACATCCACAACTCCTAGCCAGCTCTGCA
GTCAAAATACCAAGCCTCAAGCCTTGCTGGCAATGTTATTGGAGAGCCAGTCCAGGCCCT
CATACAGACCCTCACCGGATGTAGCACATGTGCTCTGGATATACCAGTGGCGTTGGCGAA
GGGAATGTAATCCAAGCTTATCAGTAATTTCAGCAGCATTCATAGCATTTGGAAGATCTT
GCTTGTTGGCAAAGACAAGCAACACAGCATCGCGCAACTCATCCTCATTCAGCATCCTGT
GGAGCTCATCTCTGGCTTCAACAACACGGTCCCTATCATTGCTGTCCACAACAAAAATAA
GACC

Homology of Contig U35_46966 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g59740.5	129	2e-61	protein\|ADP-ribosylation factor, putative, expressed
Brachypodium v1_2	Bradi1g53867.1	182	2e-60
Arabidopsis v10	AT2G47170.1	181	4e-62	\| Symbols: ARF1A1C \| Ras-related small GTP-binding family protein \| chr2:19367264-19368518 FORWARD LENGTH=181