- Probe CUST_34501_PI390587928
- Source Contig U35_46967
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34501_PI390587928 | Hv_44K_v2 | AAATCCATGAGAGGATCACTGCTCTCCATTCAACTTTGTCTGCTCTGGAAACTACAGGAG | 316 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.370 | 1.212 | 1.215 | 0.922 | 0.486 | 0.399 |
| Raw | 1107.123 | 1515.625 | 1377.363 | 1600.210 | 298.968 | 271.895 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_67418.5 | 3204 | 2e-24 | 2293 - 2352 | 100 | 60 / 60 | minus | ABC18232 |
| MLOC | MLOC_67418.3 | 2983 | 2e-24 | 2465 - 2524 | 100 | 60 / 60 | minus | ABC18232 |
| MLOC | MLOC_67418.6 | 2076 | 2e-24 | 1174 - 1233 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_67418.1 | 3452 | 2e-24 | 2535 - 2594 | 100 | 60 / 60 | minus | ABC18232 |
| MLOC | MLOC_45739.4 | 1048 | 7e-23 | 693 - 752 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_45739.6 | 993 | 7e-23 | 716 - 775 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_45739.2 | 1053 | 7e-23 | 794 - 853 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_45739.8 | 1088 | 7e-23 | 733 - 792 | 98 | 59 / 60 | plus | None |
| MLOC | MLOC_45739.9 | 1057 | 7e-23 | 702 - 761 | 98 | 59 / 60 | plus | None |
| JLOC1 | JLOC1_44511.2 | 3452 | 8e-25 | 859 - 918 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_44511.1 | 3076 | 8e-25 | 483 - 542 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_29673.4 | 1056 | 4e-23 | 697 - 756 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_29673.3 | 1075 | 4e-23 | 716 - 775 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_29673.2 | 1088 | 4e-23 | 729 - 788 | 98 | 59 / 60 | plus | |
| JLOC1 | JLOC1_29673.1 | 1107 | 4e-23 | 748 - 807 | 98 | 59 / 60 | plus | |
| Harvest21 | ABC47687 | 398 | 3e-25 | 317 - 376 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_46967 | 398 | 3e-25 | 317 - 376 | 100 | 60 / 60 | plus |
Contig Sequence (398 bp)
>U35_46967 398 Hv_44K_v2 GATCCTCAGCTAGGGGGAAACCTGTCAGCCAATGCCATGATTGGGTGCTTGCTGGAGGGG AGCACTCTCGGCCTATCCAAGTTGCTGGATGAGACATTTGACAAGCTCAAGGGAACAGAG GGTGTCTCTGTCCCTTCGGTCCGCAGCTCAGTCCTGCTCATTGGACAGAGGATGATGTAC GGACAATCTAGCCCCGATGCTGATGTGCTGGAAGATGAATCGCATCTTTCTCTTTGGTGC TGGGAGGTAAGAGATTTGAAGGTACTGCCTGTGAGAACGCGTGGGTTTTTAAGTGCGCGG AGAACTGCCAGGAAGAAAATCCATGAGAGGATCACTGCTCTCCATTCAACTTTGTCTGCT CTGGAAACTACAGGAGCTGAAGGTCACGTAAACGAGCT
Homology of Contig U35_46967 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | LOC_Os01g67100.1 | 897 | 1e-53 | protein|expressed protein |
| Brachypodium v1_2 | Bradi3g36190.1 | 932 | 2e-56 | |
| Arabidopsis v10 | None |