barSeed - Barley Seed Development Database

Probe CUST_344_PI415269222

Source Contig TA36558_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_344_PI415269222	Hv_44K_v2	GTGGAAGAAATTCAACTTGATCTTCCTCTTCTTCCTACTCCGGAAGCTCATACTACCATT	877	GeneList: None MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.041	1.637	1.770	0.980	0.610	0.664
Raw	11.954	31.570	28.235	26.146	3.995	5.103

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK356388	2867	3e-21	1671 - 1730	97	58 / 60	plus	ABC07539 ABC07541 ABC07542 ABC08486
MLOC	AK356879	2464	3e-21	1770 - 1829	97	58 / 60	plus	ABC07539 ABC07541 ABC07542 ABC08486
JLOC1	JLOC1_52147.1	1852	2e-21	1155 - 1214	97	58 / 60	plus
Harvest21	ABC07541	1642	3e-25	967 - 1026	100	60 / 60	plus	ABC07541
Harvest35	U35_15157	1642	6e-22	936 - 995	97	58 / 60	plus

Contig Sequence (1570 bp)

>TA36558_4513 1570 Hv_44K_v2
CCGACCGCCTCATCCAGTGCCTCGGCAGCTTCTATATCACCGTCAAGCGCATCAAGCCCA
GGCTCAAGTCCCCGGTGCTGCCGGACGCCGAGGACCCCGACGCCGGCTACTACCCCATGG
TGCTCGTCCAGATACCAATGTGCAACGAGAAAGAGGTGTATCAGCAATCAATCGCGGCCG
TCTGCAACCTCGATTGGCCGAGGTCCAACTTCTTGGTTCAGGTTTTGGACGACTCCGACG
ACCCGACCACGCAGTCGCTCATCAGGGAGGAGGTCGCGAAGTGGCAGCAGACCGGGGCTC
GGATTCTGTACCGGCACCGCGTGCTCAGGGATGGGTACAAGGCCGGGAACCTCAAGTCCG
CCATGGGCTGCAGCTACGTCAAGGATTACGAATTTGTTGCCATCTTTGACGCTGACTTCC
AACCAAACCCAGACTTTTTAAAGCGCACCGTGCCACATTTCAAGGACAACGATGAACTGG
GGCTGGTGCAAGCCAGATGGTCGTTTGTGAACAAGGATGAGAACTTATTGACTCGGTTGC
AGAACATCAATCTTTGCTTCCACTTTGAGGTGGAGCAGCAGGTGAATGGTGTGTTCCTAA
ACTTCTTTGGGTTTAATGGCACCGCCGGCGTGTGGAGGATCAAGGCGTTGGAGGAGTCCG
GCGGGTGGATGGAACGGACAACGGTGGAGGATATGGACATTGCAGTTCGGGCGCATCTCC
ATGGTTGGAAGTTTATCTTCCTGAACGACGTCGAGTGCCAATGCGAATTACCCGAGTCAT
ACGAGGCTTACAGGAAGCAGCAACATCGGTGGCATTCCGGTCCAATGCAGCTATTCAGGC
TTTGCATACCGGACATCATCAAGTCCAAGATTTCAGTGTGGAAGAAATTCAACTTGATCT
TCCTCTTCTTCCTACTCCGGAAGCTCATACTACCATTCTACTCCTTCACGCTCTTCTGCA
TCATCCTCCCGATGACGATGTTTGTGCCCGAAGCCGAGCTCCCAGACTGGGTCGTATGCT
ACATACCTGCCCTCATGTCCCTGCTCAACATCCTGCCGTCACCAAAGTCGTTCCCATTCA
TCATCCCATACCTGCTCTTTGAGAACACCATGTCGGTGACCAAGTTCAACGCCATGATCT
CGGGCCTGTTCCAGCTCGGGAGCGCCTACGAGTGGGTGGTGACCAAGAAGTCGGGCCGGT
CGTCGGAGGGCGACCTCATCTCCCTGGCGGCGGTGGCGGTGCCGCCCAAGGAGCTGCGGC
ACCACCAGAAGACCGGATCGGCGCCGAACCTGGACGCGTTGCTGGTGTCAAAGGAGCAGC
CGAGCCCGAAGAAGGAAGGGAAGAAGCAGAAGAAGCACAACCGGATATACAAGAAGGAGC
TGGCGCTGTCGCTGCTCCTGCTGACGGCCGCCGCTCGCAGCCTGCTGACGAAACAGGGTA
TACACTTCTACTTCCTGCTGTTCCAGGGCATCTCCTTCTTGTTAGTAGGCCTCGACCTCA
TAGGCGAGCAGGTCGAGTGAACCCCTGTAAACATGGACACGATAGATTTTAAAGGCAGTG
ATTGGCACCC

Homology of Contig TA36558_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	Description
Rice v7	LOC_Os03g56060.1	458	protein\|CSLC9 - cellulose synthase-like family C, expressed
Brachypodium v1_2	Bradi1g07277.1	701
Arabidopsis v10	AT4G07960.1	699	\| Symbols: ATCSLC12, CSLC12 \| Cellulose-synthase-like C12 \| chr4:4802628-4805114 REVERSE LENGTH=699