barSeed - Barley Seed Development Database

Probe CUST_344_PI390587928

Source Contig U35_9383

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_344_PI390587928	Hv_44K_v2	TGAGCAAAAAACTAAGCCAACACAACACAGTGTACGAGAACTAAGGGCCTTGGGTCTTAC	756	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK364313	2222	2e-24	816 - 875	100	60 / 60	plus	ABC17120
MLOC	MLOC_70060.1	6661	2e-24	6552 - 6611	100	60 / 60	minus	ABC17120
MLOC	MLOC_70060.3	3620	2e-24	3064 - 3123	100	60 / 60	minus	ABC17120
MLOC	MLOC_70060.2	4455	2e-24	3972 - 4031	100	60 / 60	minus	ABC17120
MLOC	MLOC_70060.4	2380	2e-24	1798 - 1857	100	60 / 60	minus	ABC17120
MLOC	MLOC_70060.5	3115	2e-24	2533 - 2592	100	60 / 60	minus	ABC17120
JLOC1	JLOC1_46469.4	2905	8e-25	64 - 123	100	60 / 60	plus
JLOC1	JLOC1_46469.3	2870	8e-25	64 - 123	100	60 / 60	plus
JLOC1	JLOC1_46469.2	3357	8e-25	64 - 123	100	60 / 60	plus
JLOC1	JLOC1_46469.1	3343	6e-21	57 - 109	100	53 / 53	plus
Harvest21	ABC18609	823	3e-25	757 - 816	100	60 / 60	plus
Harvest35	U35_9383	823	3e-25	757 - 816	100	60 / 60	plus

Contig Sequence (823 bp)

>U35_9383 823 Hv_44K_v2
GAAAGAAAGAAACACGAGGAGGAGCAACAGCAACGACACTGCACCGGAGCGTCTTCCCTT
CCCCGCCTCTCCCCCTCCCGGAATATACCTCCTCCGAGCCAACCCAGCCTCCCGCGCTCC
CTCCCCCTTGCCTCCGGCCATGGCGGCGGCGGCGGCGGCGGCGGAGGCGGAGGAGGGGCG
TGCGGCGACCAAGTACGTGCTGATTACCGGCGGCGTCGTCAGTGGCCTCGGCAAGGGCGT
CACTGCCAGCAGCGTGGGCGTCGTCCTCAAGTCCTGCGGCCTGCGCGTCACCTGCATCAA
GATCGACCCATATTTAAACACAGATGCTGGTACTATGTCTCCCTTTGAGCATGGTGAGGT
GTTTGTGCTTGATGATGGAGGAGAGGTGGATCTGGATTTAGGGAATTATGAGCGTTTCTT
GGATGTTACTCTTACGAGGGAAAATAACATTACCACCGGGAAGATATATCAGTCTGTCAT
TGAGAAGGAGAGGAAGGGTGCCTATCTTGGAAAGACGGTCCAGGTGGTTCCTCATGTAAC
TGATGAAATAAAACAATGGATACAATCAGTGTCCTCTGTTCCTGTGGATGGGCAGACGTG
TCCAGCTGATGTTTGTGTTATTGAATTGGGCGGTACTGTAGGTGATATTGAATCAATGCC
ATTCATTGAAGCTCTACGCCAGTTGTCGTTTTCTCTTGGTAAGGACAATTTCTGCCTCAT
ACATGTGAGCCTTGTTCCAGTGTTGGGTGTAGTTGGTGAGCAAAAAACTAAGCCAACACA
ACACAGTGTACGAGAACTAAGGGCCTTGGGTCTTACTCCTGAT

Homology of Contig U35_9383 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g36950.1	582	9e-126	protein\|CTP synthase, putative, expressed
Brachypodium v1_2	Bradi4g04870.1	579	4e-128
Arabidopsis v10	AT4G02120.1	556	7e-113	CTP synthase family protein \| chr4:940873-944097 FORWARD LENGTH=556