barSeed - Barley Seed Development Database

Probe CUST_34484_PI390587928

Source Contig U35_46971

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34484_PI390587928	Hv_44K_v2	GTTGCAAAACGTATTTGTATACAGGATTGCTTCTGTTTGCTTCATCATACTGTCCATAAA	88	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56966.2	2800	7e-23	1392 - 1451	98	59 / 60	minus	ABC47697
MLOC	MLOC_56966.4	3038	7e-23	183 - 242	98	59 / 60	minus	ABC47697
JLOC1	JLOC1_36869.5	2761	4e-23	2280 - 2339	98	59 / 60	plus
JLOC1	JLOC1_36869.4	3015	4e-23	2534 - 2593	98	59 / 60	plus
JLOC1	JLOC1_36869.3	1723	4e-23	1242 - 1301	98	59 / 60	plus
Harvest21	ABC47697	390	3e-25	89 - 148	100	60 / 60	minus	ABC47697
Harvest35	U35_46971	390	3e-25	89 - 148	100	60 / 60	minus
Harvest35	U35_4660	1614	6e-22	1186 - 1245	97	58 / 60	plus

Contig Sequence (390 bp)

>U35_46971 390 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGAATTGCATCCTATGATACAACTGATGAACATCAACTCAACG
TTTTTACAGAGTAAACAGTATTACATATTTTATGGACAGTATGATGAAGCAAACAGAAGC
AATCCTGTATACAAATACGTTTTGCAACAGAGCTAAACCACTACCACCATACCTTGGGCA
GCATAATGCATATAGTATGCAAACACGCGTGCACATCAAATTTACCAGCATGCTGGATCG
CTGGTAAGCGGTAACCAGCCATCACTACATCAGCAAAACAGGGCACCTATATGCCTCTTC
TATGGAACCATTGGGCGTTGGTAGTCGCCGATATAGGACTGATGCCCCACCCCACCCCAC
CCCCAGAGGAATCATTTCATGCATATGTAC

Homology of Contig U35_46971 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None