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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_34483_PI390587928Hv_44K_v2GGGAGGAGGAGGAAGAAGAAGATGATGATGACTTCGACGTACATAGTACCCGAGGTTTTG478GeneList: brown
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 2.3662.7931.0980.7620.6620.679
Raw 81.990130.98348.33545.25415.34517.938



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_56966.326112e-241471 - 153010060 / 60minus ABC47697
MLOCMLOC_56966.526372e-241292 - 135110060 / 60minus ABC47697
MLOCMLOC_56966.129732e-241925 - 198410060 / 60minus ABC47697
MLOCMLOC_56966.430382e-241648 - 170710060 / 60minus ABC47697
JLOC1JLOC1_36869.527618e-251069 - 112810060 / 60plus
JLOC1JLOC1_36869.430158e-251069 - 112810060 / 60plus
JLOC1JLOC1_36869.225968e-251069 - 112810060 / 60plus
JLOC1JLOC1_36869.123985e-221069 - 112310055 / 55plus
Harvest21ABC476985383e-25479 - 53810060 / 60plus
Harvest35U35_469725383e-25479 - 53810060 / 60plus



Contig Sequence (538 bp)

>U35_46972 538 Hv_44K_v2
CGTATGGCGGTAAGGCCGGAGGTCGAGCCGACTAAGGAAGCCACGACGCCTGATGTGCTG
TCCGTGGCCGATGTGCTGCGGAAGGAGGAGGAGGACGCCGGCGATGACGACGAGAGGTTC
TCGGACGCGCTGGACACGCTCTCCCGTACAGAGTCCTTCACCGTGAACTGCAGTGTCAGC
GGTCTCAGCGGCGTGCCGGACCGCCCCGCCGGTGCGCCCGGCGCACGCGGCTTCATGATG
GACCGCTTCCTACCGGCCGCGCAGGCGGTGGCCGTGGGCTCCCCGCAGTACACCTTCCGC
AAGGCCAGTGTAGCTGGATCCACCGGCAACTCTGCCCGCGAGCATGCACATGCCGCTGCG
GCCAATTGGAGGATGGGGAGCGATGACGATCGCGTCAGGAGAACGCCTGTCCAGCTCCCT
TACCAGCATATGCCTCCCAATTATTTGTCCTGTAACTATCCCAGACGCGATGAGCATGGG
GAGGAGGAGGAAGAAGAAGATGATGATGACTTCGACGTACATAGTACCCGAGGTTTTG



Homology of Contig U35_46972 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os01g55410.16835e-58protein|expressed protein
Brachypodium v1_2Bradi2g50410.16619e-69
Arabidopsis v10None