barSeed - Barley Seed Development Database

Probe CUST_34482_PI390587928

Source Contig U35_46973

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34482_PI390587928	Hv_44K_v2	TTGTGTCAGTTATATTCTACCTACCAGAGATTTTTATCACCCAACTTGCGAGGAATAAGT	228	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_29110.2	4344	2e-24	3819 - 3878	100	60 / 60	plus	ABC09290
MLOC	MLOC_29110.1	6672	2e-24	4011 - 4070	100	60 / 60	plus	ABC09290 ABC10354 ABC13170 ABC13171
JLOC1	JLOC1_19422.1	4470	8e-25	3894 - 3953	100	60 / 60	plus
Harvest21	ABC50110	400	1e-23	206 - 266	98	60 / 61	minus
Harvest21	ABC09290	2231	1e-23	1943 - 2003	98	60 / 61	plus	ABC09290
Harvest35	U35_46973	550	3e-25	229 - 288	100	60 / 60	minus
Harvest35	U35_15906	2247	1e-23	1972 - 2032	98	60 / 61	plus

Contig Sequence (550 bp)

>U35_46973 550 Hv_44K_v2
TTTTTTTTTTTTTTTTTAAAGAGAATGTGCGTCAGCCAAGCATACACAAACATCATATAA
TGAGATCCAGATTAAATACATCATCATTGTGCCCTAAAAATATGGATCTGTCCAAAAATC
CTACACCGTTTGTTGATGATTGACCAACCGCAGCCGTATCAGGCCGAGATCAATCGATGA
CGCAAAAAAAAGGGGGAAGAAACGACGCAATGGAACCAATTATACTATACTTATTCCTCG
CAAGTTGGGTGATAAAAATCTCTGGTAGGTAGAATATAACTGACACAACAGTCTTCGAAC
TGGAGATACAAACATGATGAACACGGAGGTGAAGCCACAATAGTCGTCGTTGCCACTTAT
CTTATCTCGATTGTGTAGGGGAGCAGAGGAGGCCTGAGGCGTCCGCCCCGACCACCGAGA
GCTCGCATATGCTGCACAGCTGACCCTCGACTGAGGGCACGAACCGGGACGCGCAGTAGG
GGCAGGAGACGTCCTTCTGCCCGCGGTAGATCGGGACAAAGGTTGCCCCGCAGACGACGA
ACGGGTTTCT

Homology of Contig U35_46973 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None