barSeed - Barley Seed Development Database

Probe CUST_3447_PI390587928

Source Contig U35_11845

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3447_PI390587928	Hv_44K_v2	ATTATATGTGGGGTTGTAAGTGTAAAGCAGAGGTCCACGGTTTACCATTTACTCCCTCTG	316	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.111	2.175	1.124	0.781	0.602	0.538
Raw	24.796	38.125	17.908	20.461	2.790	3.993

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6791.1	2287	2e-24	1178 - 1237	100	60 / 60	minus	ABC06587 ABC21692
JLOC1	JLOC1_4443.1	1611	8e-25	604 - 663	100	60 / 60	minus
Harvest21	ABC21692	419	3e-25	44 - 103	100	60 / 60	minus	ABC21692
Harvest35	U35_11845	419	3e-25	317 - 376	100	60 / 60	plus

Contig Sequence (419 bp)

>U35_11845 419 Hv_44K_v2
TCCTCCGGGCTGCAGGAATTCGNACGAGGCTCCAGGTCAAGATCGACGGCCGCGTCAGGT
GGAAGGTCGGCAGCTGGATCTCTGGCCACTACCACCTCTTCGTCACCTGCCCTGCCTTCC
TCGTCACCAGCGGCGGCAACGGCGCACCAGGGGCTAGTGGGTTCAAGTTCCAGACGACCA
CTTACTGCCACGTAGAGGTCTAGTTTATCACAGCTAGCTCCAGGGGTCCAGTCGCCGGCG
AGAGGTAGGTTTCTTCTTGGCTTGTGTACCATAGTGACCGCAGAGGCACAGATCGATCGG
TGGTAATAATTACACTATTATATGTGGGGTTGTAAGTGTAAAGCAGAGGTCCACGGTTTA
CCATTTACTCCCTCTGTAAATTAATATAAAAACATTTAAATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_11845 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None