- Probe CUST_34478_PI390587928
- Source Contig U35_46977
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34478_PI390587928 | Hv_44K_v2 | GACATATATATGTATTAATGGTTGGTCAATCAATATATCGAGTGGTATGGGGCAGGTTAA | 15 | GeneList: blue MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.504 | 1.538 | 1.252 | 0.775 | 0.323 | 0.361 |
| Raw | 1322.327 | 2130.930 | 1517.873 | 1386.071 | 216.151 | 265.414 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC47703 | 391 | 3e-25 | 16 - 75 | 100 | 60 / 60 | minus | ABC47703 |
| Harvest35 | U35_46977 | 391 | 3e-25 | 16 - 75 | 100 | 60 / 60 | minus |
Contig Sequence (391 bp)
>U35_46977 391 Hv_44K_v2 TTTTTTTTTTTTTTTTTAACCTGCCCCATACCACTCGATATATTGATTGACCAACCATTA ATACATATATATGTCCTTTGATGACCAAGATCATGTCACTACCTAGGTTGCCCATCTATC CACGATCATCTTCTTGTCACTACCTGACCGATCTACATGGGCAAAAGAATTCTTTCATCC CGATCAAAGTCACCAGACAGCCTTACCCCCTCGCGCCTCATCCAAACCCGGGGGTGACAA AGGAGGAACAGCTGCGGTTGCGCCACCATCATCCCTGTAGGCAGGGGCAGGCTCGACGAC GTTCAAGATCTTCCTACCATTAGCTGCGACGAATGTCCTCGGGAAATCTTCATGGTCGGG ATCGGTGCTGTTTCGGTCACTGATTTCCTTC
Homology of Contig U35_46977 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |