barSeed - Barley Seed Development Database

Probe CUST_34474_PI390587928

Source Contig U35_31011

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34474_PI390587928	Hv_44K_v2	AGCACTTCAGATTGTGATGTTTTGAATTCAGACCATCTGTTAACATGTAGTTCGTTCGTG	595	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.830	3.059	1.446	0.421	0.588	0.523
Raw	32.303	58.005	23.239	9.345	3.638	3.987

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_55950.1	4899	2e-24	1996 - 2055	100	60 / 60	minus	ABC08528
JLOC1	JLOC1_36133.1	4861	8e-25	2806 - 2865	100	60 / 60	plus
Harvest21	ABC31152	655	3e-25	596 - 655	100	60 / 60	plus
Harvest35	U35_31011	655	3e-25	596 - 655	100	60 / 60	plus

Contig Sequence (655 bp)

>U35_31011 655 Hv_44K_v2
GACAGGCTGAAGGTTGCACTGGGAGTAGCTCAAGGATTGGCATATCTTCATCATGACTAT
GCTCCTCGCATGCTGCATCGCAATCTCATGTCGAGCAATGTGCTGCTTGCCGATGAATTT
GAGCCCAGGGTTGCTGGGTTTGGGATTCATCGAATCCTTGGGGAAAAGGCCTATCGATCT
TTCTTGGATTCAAATTTGAATCACAAGTGCTACATCGCACCAGAGCAAAACTTCACAAAG
AACCCAACGAACCTCATGGACGTCTACAGCTTTGGGGTCATTCTCCTGGAGCTCATCACC
GGAAGGCCAGCAGAGCAGCCGTCGTCCAAGGACTGCTCGGACATTGTTAGCTGGGTGCGG
AGGCGGATCAACCTGATCGACGGCCCATCGCAGATACTCGACCCCAACGTCCCCGGCACA
GAGCAACAGGGGATGAAGGCGGCCCTGGAGCTCGCAGTGCGCTGCACGTCTGTGAAGCCT
GACCAGAGGCCGGACATGTATGAAGTTGCGAGGTCGCTGCAGGCGCTGTAGTTTATACCT
TTCATCCACGGACACAGCCATACACTGAAGTTGCTATGTGACCTTTGACTGGAGAAGCAC
TTCAGATTGTGATGTTTTGAATTCAGACCATCTGTTAACATGTAGTTCGTTCGTG

Homology of Contig U35_31011 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g39650.1	919	2e-67	protein\|receptor protein kinase CLAVATA1 precursor, putative, expressed
Brachypodium v1_2	Bradi5g13170.1	859	2e-88
Arabidopsis v10	None