barSeed - Barley Seed Development Database

Probe CUST_34465_PI390587928

Source Contig U35_31019

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34465_PI390587928	Hv_44K_v2	AATCAACTTGTAATGAGATCAGACTTCTCGTGTATTGACTGTCTTGGTTCTACCCGCAAA	410	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363964	3082	2e-24	2168 - 2227	100	60 / 60	plus	ABC06045 ABC13768 ABC31161 ABC41631 ABC42806
MLOC	AK251651.1	2969	2e-24	2143 - 2202	100	60 / 60	plus	ABC06045 ABC13768 ABC31161 ABC41631 ABC42806
MLOC	MLOC_73954.3	3868	2e-24	1306 - 1365	100	60 / 60	minus	ABC06045 ABC13768 ABC31161 ABC41631 ABC42806
MLOC	MLOC_73954.4	2412	2e-24	812 - 871	100	60 / 60	minus	ABC13768 ABC31161 ABC41631 ABC42806
Harvest21	ABC31161	479	3e-25	411 - 470	100	60 / 60	plus	ABC31161
Harvest35	U35_31019	479	3e-25	411 - 470	100	60 / 60	plus

Contig Sequence (479 bp)

>U35_31019 479 Hv_44K_v2
CGCCCCTTCTCTTTCTCCTCGTTCGAAATGGTGCTACAATTACGATTTTAAATAGCGGAT
AGCGGGCTCACTATGGATTTGGGTCGGTATAGCGGATCGCAAATTGCGGCGCTATTGCGG
GCGCTATGTCCTCACAACATACTTATAAAAATGTGCAAGATATTAAGCGTGTTTCGTATA
TTTTTATAGAGTTGTTAATAAAAATTGTTATTTTAACTTTGCAATTTATTTGTATAAGCT
CTGTGTGACAGTCTCCCTAAGTGACATGCACATAAGATCTTTGTGTCGTCAAAGCTGTGG
GCTACAGTCTACAAAACCACTTATGAAACAATTGTGTCCATGTGTATCCAGCCCCAAACC
TCACTATTTTAATCAAAGAACTTCTCTATCTAGAAGCACCATATTAAATTAATCAACTTG
TAATGAGATCAGACTTCTCGTGTATTGACTGTCTTGGTTCTACCCGCAAAAAAAAAAAA

Homology of Contig U35_31019 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None