- Probe CUST_34457_PI390587928
- Source Contig U35_46988
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34457_PI390587928 | Hv_44K_v2 | TTTGAAGAAGAGAAAGATCATGTCGCCTACTGCTCGGAGATCCACGTTGCCATTTGAGAA | 148 | GeneList: cyan MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.306 | 1.555 | 1.444 | 0.604 | 0.468 | 0.308 |
| Raw | 138.616 | 123.752 | 116.520 | 70.962 | 20.569 | 15.178 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_6327.2 | 4033 | 2e-24 | 3308 - 3367 | 100 | 60 / 60 | minus | ABC17426 |
| MLOC | MLOC_6327.5 | 3442 | 2e-24 | 2727 - 2786 | 100 | 60 / 60 | minus | None |
| MLOC | MLOC_6327.3 | 4039 | 2e-24 | 3314 - 3373 | 100 | 60 / 60 | minus | ABC17426 |
| JLOC1 | JLOC1_4119.1 | 3982 | 8e-25 | 610 - 669 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC47716 | 407 | 3e-25 | 149 - 208 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_46988 | 407 | 3e-25 | 149 - 208 | 100 | 60 / 60 | plus |
Contig Sequence (407 bp)
>U35_46988 407 Hv_44K_v2 GGCCCATGGAAGCTGCACAGGTTCACATGGAAACACAAGCTAGTGCAAGATCGAATTGGC CTAGATGTAGCAGCAGCAGGTCTTCCAATTCAAGTCAATCTCCAATGCAAGATACCACAG GACATCATTCCTACCAGGATCAAAGCGTTTTGAAGAAGAGAAAGATCATGTCGCCTACTG CTCGGAGATCCACGTTGCCATTTGAGAACAATGATCCTATGAGGAGGCATGGAAAGGGCA AAGGTCTAATGACAGTATGGCATGCAATGTATTCCCAAACTGCAGAAATTCAAGATTGCT CCAGTTTCATTGATGAAAGTGGTTGCTTGAGGTCATTGAGACCATTCGAAGATTGTGATC GAAAGCTTGCCCAAGTGCAGAGACAAACTTTGCCACGGAAGAAAGTA
Homology of Contig U35_46988 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |