barSeed - Barley Seed Development Database

Probe CUST_34438_PI390587928

Source Contig U35_43003

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34438_PI390587928	Hv_44K_v2	TGGAATCTGGACTGTGCTGTGCAGATTAGCGTATCAGGTGTAATTATTTACATTGATAAT	42	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK373173	1444	2e-24	1365 - 1424	100	60 / 60	plus	ABC39103
MLOC	MLOC_1819.1	298	2e-24	54 - 113	100	60 / 60	minus	ABC39103
Harvest21	ABC39103	582	3e-25	43 - 102	100	60 / 60	minus	ABC39103
Harvest35	U35_43003	582	3e-25	43 - 102	100	60 / 60	minus

Contig Sequence (582 bp)

>U35_43003 582 Hv_44K_v2
TTTTTTTTTTTTTTTTTGATTTGAAGAGTTAAAACGAATATTATTATCAATGTAAATAAT
TACACCTGATACGCTAATCTGCACAGCACAGTCCAGATTCCATCTATAAGCAATACTATC
TTAAAAGAACAGAGCAGCAAATCTGCAACTTAAACTAAATCTTCCCTGACTCTAAGTTGG
GCTTAACAATGTAATACAGAAAGAATGTAGCTGCTGAACAACTTACAGAGTTAGCCAGTT
CTAAGAAACCAAGTAAATTCTGAAGAAAAAGTTGCTTGTGCTGCTGCCATCTTCTAAAAT
GCATGGCATGGGCTGCGAGCATTCAGCTTGAGCCACTCAAACAAAACCAAAAAGTCCTCT
TCCAAACAAGCGCGAGCTTCTCCTCCTCCCCCTGTTTGCAGTTCTGTTGCTCCTCATCGG
CGTCAGATAAAACCGCAGCATCCCATTATCGAAGTTCCCAGGGGAAGTGTAATGCACGCT
CCTGCTCCTGCCGATCCTGCACTCCTTGTTCTTGAGCCAATCCGCGCGGAAATTCTGCGC
GTCCCCGTTAACCGCGGCAGCTTGGGAGCTTCTGCTTGAGCT

Homology of Contig U35_43003 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None