barSeed - Barley Seed Development Database

Probe CUST_34430_PI390587928

Source Contig U35_43007

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34430_PI390587928	Hv_44K_v2	ATGGAGTATGCCATCAAGCAGCACGAGGGCAAGAGGGCCGTGGAGGATGGAGAGGACCTG	510	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_39474.1	1654	2e-24	783 - 842	100	60 / 60	plus	ABC12521
JLOC1	JLOC1_25738.1	1197	8e-25	370 - 429	100	60 / 60	plus
Harvest21	ABC39113	590	3e-25	511 - 570	100	60 / 60	plus
Harvest35	U35_43007	590	3e-25	511 - 570	100	60 / 60	plus

Contig Sequence (590 bp)

>U35_43007 590 Hv_44K_v2
GCTCCGTCGTCGTGGCCTCGTCCCCGGACGCCGCGCGCGAGGTCATGAAGACGCACGACG
TCGCCCTGGCCGACCGGCCCTGGAACCCGACCATCAAGATCATGATGGCCGACGGGCAAG
GCCTCGTCTTCGCGCGCTACGGCGCCCTCTGGCGGCAGCTCCGCAAGATATGCATCCTGG
AGCTACTCAGCGCGCGCCGCGTGCAGTCGTTCCGCCAGATCCGGGAGGACGAGGTCGGCC
GCCTCGTGGCCGCCATCGCCGCCGCGCCGCCCGGCCAGCCCGTCAACGTCAGCGAGCGGA
TCGCCGTGCTCATCACCGACTCCGCCGTGCGCACCATGATCGGGGACANGGTTCGAGAGG
AGGGAGGAGTTCTTGCAGGTCCTCGAGGAGGGGGTCAAGCTCGTCTCCGGGTTCAGCCTC
GGCGACCTGTTCCCGTCGTCCTGGCTCGCCAACTTCATAAGCGGCACCGCGCGGATGGCC
AAGGAGGTCCACCGGAAGAGCTTCGAGCTCATGGAGTATGCCATCAAGCAGCACGAGGGC
AAGAGGGCCGTGGAGGATGGAGAGGACCTGGTGGACGTGCTCTTGAGGAT

Homology of Contig U35_43007 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g09200.1	520	4e-66	protein\|cytochrome P450 71D10, putative, expressed
Brachypodium v1_2	Bradi3g06240.1	511	3e-69
Arabidopsis v10	None