- Probe CUST_3441_PI390587928
- Source Contig U35_23821
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_3441_PI390587928 | Hv_44K_v2 | ATTGTGATTCCCTTGTGCTGTACATTGCAACTGCAGTGAAATTCAAGTTTTGTCAAAAAA | 441 | GeneList: yellowgreen MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.001 | 2.120 | 2.006 | 0.830 | 0.150 | 0.128 |
| Raw | 275.276 | 900.999 | 730.184 | 498.907 | 29.787 | 28.944 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_57423.1 | 3587 | 9e-22 | 153 - 207 | 100 | 55 / 55 | minus | ABC18894 ABC24430 |
| JLOC1 | JLOC1_37217.1 | 2476 | 5e-22 | 98 - 152 | 100 | 55 / 55 | minus | |
| Harvest21 | ABC18894 | 511 | 3e-25 | 441 - 500 | 100 | 60 / 60 | plus | ABC18894 |
| Harvest35 | U35_23821 | 512 | 3e-25 | 442 - 501 | 100 | 60 / 60 | plus |
Contig Sequence (512 bp)
>U35_23821 512 Hv_44K_v2 CGGCGCAGGTGCTGTCCAGCCTGCTGTCGCAGCAGGCGAACCGGGTCATCTTCATCCAGG ACGGCGACAACCTGGACCGGCTGCTGCAGCTGCTCGACCCCTCCGAGGGCAAGTTGATGG CCAAGGGCTTCATCCTCTCGGCCGTCATGTCGCTGGCCGAGACCGGCGCCGGGAGGAAGA AGATCGTGTCGTCGGAGCACTTCGGGAGCCTCAAGGAGCTCGCCGACTCCGGCGACCCGG ACGCCAGGAAGGCCGTCAAGAAGATTGCCAACAACAGGCTGCAGACCATGTTCAGCAAGA TATGGAGCGCCTAAGTTACTATTTTCCTGACGCCCTTTCTTACCCAGACGCCTTCACTAA ACACCCCTTTGATTTAGCGCTAGTAGTACATTTGATTTGCTGTCTATATAGTTTTTTTCT GCATATCCACATCCAACCACCATTGTGATTCCCTTGTGCTGTACATTGCAACTGCAGTGA AATTCAAGTTTTGTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_23821 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |