barSeed - Barley Seed Development Database

Probe CUST_34408_PI390587928

Source Contig U35_31043

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34408_PI390587928	Hv_44K_v2	CACGCCATTCGATTTGTTTTCGCAGTATACAAAATTGTTAGAGTAAAACGAGATTGAATG	332	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.127	1.374	2.302	2.351	0.929	0.778
Raw	5.723	128.461	167.550	265.874	37.048	34.822

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60174.1	1548	2e-24	1466 - 1525	100	60 / 60	plus	ABC31185
JLOC1	JLOC1_39218.1	1705	8e-25	1505 - 1564	100	60 / 60	plus
Harvest21	ABC31185	441	3e-25	333 - 392	100	60 / 60	plus	ABC31185
Harvest35	U35_31043	441	3e-25	333 - 392	100	60 / 60	plus

Contig Sequence (441 bp)

>U35_31043 441 Hv_44K_v2
TCTAGATCGACGACGGCCTCTACGGCACCCTCAGCTGCATCCCCATGGACCACTACGTGC
CGCGCCCAAGGCCGCTCGCCGCGCCGCGCGCCGGCGAGAAGACGTACACGTCGACGGTGT
TCGGGCCGACGTGCGACTCCCTCGACACGGTGGTGACCGGGTACCAGCTGCCGGAGATGA
GCGTGGGGGACTGGCTCGTGTTCGACGACATGGGCGCCTACACCACCGCCTCCGGCTCCA
ACTTCAATGGCTTCTCCACCTCGGACATCAAGACCTACTTGGCCTACTCCAGCTGACATG
GAACATATGATGTGGACACGTACCACGTAGCACACGCCATTCGATTTGTTTTCGCAGTAT
ACAAAATTGTTAGAGTAAAACGAGATTGAATGAAAGTAATGGACGATCAGTCCTGATTTT
TATTGAAAAAAAAAAAAAAAA

Homology of Contig U35_31043 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi4g36810.1	404	2e-51
Arabidopsis v10	None