barSeed - Barley Seed Development Database

Probe CUST_34407_PI390587928

Source Contig U35_31044

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34407_PI390587928	Hv_44K_v2	CGTGTAAGTTGTTGACTTAATACTTGTTTCCAACTATGCATCGTACCGTCTGTTGGCATA	434	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK361772	496	2e-24	360 - 419	100	60 / 60	plus	ABC04257 ABC29361
MLOC	MLOC_39723.1	1123	2e-24	723 - 782	100	60 / 60	plus	ABC04257 ABC29361
JLOC1	JLOC1_25916.1	983	8e-25	723 - 782	100	60 / 60	plus
Harvest21	ABC52376	638	3e-25	499 - 558	100	60 / 60	plus
Harvest21	ABC31186	494	3e-25	435 - 494	100	60 / 60	plus
Harvest21	ABC04257	1043	3e-25	850 - 909	100	60 / 60	plus	ABC04257
Harvest21	ABC29361	258	1e-23	158 - 217	98	59 / 60	plus	ABC29361
Harvest35	U35_50294	638	3e-25	499 - 558	100	60 / 60	plus
Harvest35	U35_31044	494	3e-25	435 - 494	100	60 / 60	plus
Harvest35	U35_15865	825	3e-25	747 - 806	100	60 / 60	plus
Harvest35	U35_15864	1050	3e-25	857 - 916	100	60 / 60	plus

Contig Sequence (494 bp)

>U35_31044 494 Hv_44K_v2
CTCAAAACCCTCGTCTCGTCCGTCCCCCCTCCGCCGCCGCCGCCGCCGCCGGTGCCTAGC
AAGATGAGTCGGCACCCTGAAGTCAGATGGGCTCAAAGGATTGACAAGGTTTGGGTGGCA
TGGGTGGTTTGGCTGGTATGATGGGCGGAATGGGCGGTATGGGCATGCCGCCTGGTATGG
AAGGTTTGGGTGCTATGGGGATGGATGAGTTTGAGGATGAGAGTGACGACGAAGGGGAAG
TGTCAAAACCTCAAGACGCAGGGAAGGCTGATGCCGCCCAAATCTCCCAGGAGGTGGAAG
GCAAAGCTGGCCCACCAGCTCAGAGCAACTGAAAGCATTCCACTCAATAATCCCTACTCG
ATTGTATCCTAGCATTTTTTTATGAACGTGCTGAACTGAAGACACATTCTGCTCGCTGGT
TGGGGTTGGTGTCTCGTGTAAGTTGTTGACTTAATACTTGTTTCCAACTATGCATCGTAC
CGTCTGTTGGCATA

Homology of Contig U35_31044 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None