barSeed - Barley Seed Development Database

Probe CUST_343_PI415269222

Source Contig TA46526_4513

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_343_PI415269222	Hv_44K_v2	GGTGTACTGGCATTCAGCCTTTTATGGCTTGGCTTGTATTAACTCTGATGAATTGCTGGG	1124	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.549	1.542	1.252	0.819	0.313	0.334
Raw	4496.997	7030.503	4957.540	5145.850	682.290	800.216

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_62969.1	3750	7e-23	929 - 988	98	59 / 60	minus	ABC00332 ABC00945 ABC00953
JLOC1	JLOC1_41234.1	3803	4e-23	2817 - 2876	98	59 / 60	plus
JLOC1	JLOC1_41233.1	1270	4e-23	792 - 851	98	59 / 60	minus
Harvest21	ABC00332	1247	1e-24	1129 - 1187	100	59 / 59	plus	ABC00332
Harvest35	U35_22643	1204	3e-25	1128 - 1187	100	60 / 60	plus

Contig Sequence (1184 bp)

>TA46526_4513 1184 Hv_44K_v2
ATTTCTCAGTTGGTTCAAAGTGCACTTGATGGCTATAAGGTATGCATATTTGCTTACGGG
CAAACTGGTTCTGGTAAGACGCACACTATGATGGGAAATCCTGAGTTCAATGATCAGAAA
GGGTTAATACCTAGATCGCTTGAACAAATTTTTGAAACTAGTCAATCTCTTATGTCACAA
GGATGGAAATATAAGATGCAGGCTTCAATGCTAGAAATATACAATGAGACTATACGTGAC
TTGTTAGCGGCAAGTCGCACATCCATCCAAGATGGTGCTGCTTCGAAATATAATATCAAA
CATGATTCCAATGGTAATACCCAGGTGTCTGACCTGACAATCGTTGATGTACGAAGTATC
AACGAAGTTTCTTCTTTGCTCAAGCGGGCTGCACAAAGCAGATCAGTTGGAAAAACACAA
ATGAATGAAGAATCATCTAGAAGTCACTGTGTTTTCACGCTTCGGATTTTTGGTGTAAAT
GAGGGAACTGATCAACAAGTGCAAGGTGTTCTCAATTTAATTGATCTTGCAGGCAGTGAA
CGGCTTAACAAAAGTGGTGTCACAGGGGATAGACTCAAGGAAACCCAGGCAATTAACAAG
AGTTTGTCGTCCTTGAGTGATGTTATCTTCTCCATTGCTAAGAAAGAGGAACACATTCCA
TTCAGGAACTCCAAGCTGACGTATCTACTCCAGCCATGCCTGGGTGGAGACTCGAAGACG
CTAATGTTTGTGAATCTATCCCCGGAAGTGTCTTCTACAAGCGAGTCTATTTGCTCGCTT
CGTTTTGCTGCTCGGGTGAACTCTTGTGAGATCGGCGTCCCTCGTCGTCAGACTCAAATG
CGCAGCTTGTCACAAGGATGAGTCTACGCAGTCAATTCACTGTCAAATCCCATCCCATCC
ATGGGCCATCAGTAATGTACGTGTGTTGTTTGTTTGTTGATAATTGAGGGATGCAATCCA
TCATTTGCACCGCATTTAGAGGTTGTATATTCTCATTTGCTTTGTTGTTTGTTCTTGCTG
ATTATATTAACAGTCAGTCAGGTGTGGCGTGCTGACGTTTCCGTTTCAATCATCTAATCT
GTATCGGTTTTTGATACTCTACTATAGCGTAGTTGAGCTCTGTAGGTGTACTGGCATTCA
GCCTTTTATGGCTTGGCTTGTATTAACTCTGATGAATTGCTGGG

Homology of Contig TA46526_4513 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g01490.1	395	0.0	protein\|kinesin motor domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g59490.1	684	0.0
Arabidopsis v10	AT4G05190.1	790	4e-149	\| Symbols: ATK5 \| kinesin 5 \| chr4:2675338-2679482 FORWARD LENGTH=790