- Probe CUST_34379_PI390587928
- Source Contig U35_43033
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_34379_PI390587928 | Hv_44K_v2 | AGAAGCTTACGACAATCCTGTTCTCTGCCTTTACCAAGACCGTCTCCTTCGGCCCCATGG | 190 | GeneList: saddlebrown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.340 | 0.495 | 1.347 | 1.299 | 1.413 | 1.211 |
| Raw | 5.263 | 12.405 | 32.738 | 41.886 | 18.518 | 17.386 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC39175 | 325 | 3e-25 | 191 - 250 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_43033 | 325 | 3e-25 | 191 - 250 | 100 | 60 / 60 | plus |
Contig Sequence (325 bp)
>U35_43033 325 Hv_44K_v2 GCCGGCATCTCCCTCCGCATCAAGGCTCCCGCTGGAACCACCTTTGCGATCCAGCTCGAC TCTTCCAACACGTGCGACCCCACCGTAGCCCAGTCTTTCAGCCAGACCACTGCTCAGCTT GGCTGGACCTTTGATGGCACCGAGAAGCTCTACACGATTCCCTTTGCCAAGTTCGCCGGC CTCAACACCGAGAAGCTTACGACAATCCTGTTCTCTGCCTTTACCAAGACCGTCTCCTTC GGCCCCATGGCTTTCTACTGCGGCAGCACTGGCGAGTACGTCGTCACCACCGCCAACCCC CCGACTGCCCCCACCGCCACGGTTG
Homology of Contig U35_43033 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |