barSeed - Barley Seed Development Database

Probe CUST_3436_PI390587928

Source Contig U35_23828

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3436_PI390587928	Hv_44K_v2	ACCCAAGGTCAGCAAACACAGATTGCACGAAATGAGCAAAGGATATCTCAGATCATGGAG	676	GeneList: brown4 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.321	1.126	1.177	0.839	0.682	0.478
Raw	163.873	189.912	198.509	195.432	62.409	49.212

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251586.1	2300	2e-24	618 - 677	100	60 / 60	plus	ABC17970
MLOC	MLOC_61527.1	2133	2e-24	1632 - 1691	100	60 / 60	minus	ABC17970
JLOC1	JLOC1_40212.1	2126	8e-25	313 - 372	100	60 / 60	plus
Harvest21	ABC19349	740	3e-25	677 - 736	100	60 / 60	plus
Harvest35	U35_23828	740	3e-25	677 - 736	100	60 / 60	plus

Contig Sequence (740 bp)

>U35_23828 740 Hv_44K_v2
CGCACCATACGCCATCCCCGACTGGAGCGCCGGCCCGGAACACCCCTTCTTCCTCGAGGT
GCTCAAGGAAGGCCTCATCGTCGAAAAGCTTGACGTGTCTAAGAAAGGAGCTTACATGTT
TGGCCGAATTGATCTATGCGATTTCATGCTGGAGCATCCCACCATTTCCCGTTTTCACGC
AGTTCTGCAGTTTAGAAACGATGGGCAGGTTTTCCTTTACGATCTTGGAAGCACACATGG
TTCTTCCATCAACAAAACTCAGATCAAGAAGAAGATGTACACACCGATTCATGTTGGAGA
TGTAATTCGATTTGGGCAGTCATCACGTCTGTACATTTTCCAAGGACCATCTGAGCTGAT
GCCTCCAGAAAAAGATATGCAGAAACTCCGTGATGCTAAGATTCGGCAAAATCTGCTTGA
TCGTGAAGCTTCCCTTTTACGAGCGAAAACTCAAGCAGCTTTAGCAGATGGGATCTCATG
GGGTATGTCTGAGGATGCACCCGAAGAAGACGGGGAGGATGAGGCAGATGAGATCACGTG
GCAAACCTACAAAGGTCAGCTTACGGACAGACAGGAAAAGACACGCAGCAAATTAATAAA
ACGAATGGAAAAGGTTGCCAACATGAAGAAAGAGATCGATGCAATACGAGTTAAGGACAT
TTCTCAAGGTGGGTTAACCCAAGGTCAGCAAACACAGATTGCACGAAATGAGCAAAGGAT
ATCTCAGATCATGGAGGAGC

Homology of Contig U35_23828 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g16430.1	765	2e-130	protein\|FHA domain containing protein, putative, expressed
Brachypodium v1_2	Bradi1g43620.1	737	1e-136
Arabidopsis v10	AT5G38840.1	735	5e-96	SMAD/FHA domain-containing protein \| chr5:15551329-15554846 FORWARD LENGTH=735