barSeed - Barley Seed Development Database

Probe CUST_34364_PI390587928

Source Contig U35_31069

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34364_PI390587928	Hv_44K_v2	AAAGCAGAGGACATGACTGGGATTTCCTTATCTTCAGCCTGCTTTTCCAGTGCTTGTTGT	393	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70309.2	2401	2e-24	172 - 231	100	60 / 60	minus	ABC49870
MLOC	MLOC_70309.1	2410	7e-23	1992 - 2051	98	59 / 60	plus	ABC49870
JLOC1	JLOC1_46659.2	2476	8e-25	2063 - 2122	100	60 / 60	plus
JLOC1	JLOC1_46659.1	2372	8e-25	1959 - 2018	100	60 / 60	plus
Harvest21	ABC31213	580	3e-25	394 - 453	100	60 / 60	plus
Harvest35	U35_31069	580	3e-25	394 - 453	100	60 / 60	plus

Contig Sequence (580 bp)

>U35_31069 580 Hv_44K_v2
CAGGAGGTTGCTTATTGGAAGATATCATGCTAGAAATAGATCGCATCATTCGTCCACAGG
GATTTATCATTATCAGAGATGAGAATACCACTCTCTCAAGAATCAGTGATCTCGCACCAA
AGTTCCTATGGGATGTCACGACTCGCACGTTGGAAAACGAAGAGAACAGGCCGGAGCAGG
TCTTGATTTGTAGGAAGAAATTCTGGGCCATTGTTTAAGTAGTGCTTGTGCCTGAAGATT
TTATCTTACGTCCTATCCCACCATCCGGTATCTTGCTGACACAACATAAGGAAGATTTTC
GGGTGTACAAAAAAGTTTCAAGATGTTCCTGCAGTGTGCACAAGACATTTGGTCGCGGAT
TCTTTCCAGCTGAGGACACCGCATTACAGAAAAAAAGCAGAGGACATGACTGGGATTTCC
TTATCTTCAGCCTGCTTTTCCAGTGCTTGTTGTGTAATGCCAACTTCTTGTCTTGGAACG
ATGAATCGGCAGGTGTAGAAGGACAAGATAACGCTCTAGATTGTCATGTAATTTGCTAAT
TTTGTAAACTAGTTTAGTTTAGGTTTTTTTCTTTCTTTCT

Homology of Contig U35_31069 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None