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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_34359_PI390587928Hv_44K_v2TGAACTCCTCCTCAACTTGATGAATGGGTCTGTCTGTTTGTTTCTTTCCGGCTAGCACAT652GeneList: darkolivegreen
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.2530.3440.5751.7681.6242.510
Raw 139.331309.009454.6222139.434695.8301179.967



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK249893.19442e-24677 - 73610060 / 60plus ABC08238
MLOCMLOC_7215.110332e-24222 - 28110060 / 60minus ABC08238
JLOC1JLOC1_4757.110728e-25753 - 81210060 / 60plus
Harvest21ABC082389523e-25659 - 71810060 / 60plusABC08238
Harvest21ABC082377123e-25653 - 71210060 / 60plus
Harvest35U35_35169553e-25662 - 72110060 / 60plus
Harvest35U35_35147123e-25653 - 71210060 / 60plus



Contig Sequence (712 bp)

>U35_3514 712 Hv_44K_v2
GTTCCTCTTCTGCTTCCTTGAGCTGGGAGCTGCTTCAGCCATGTCCTCCTTCTCCAGGTT
CGAGGGTAGTAAAGGAGGAGGCGGGAGATCCATATCGCTGGCTGCCTCCAGGGCCAAGCT
CGCCGCGGCCACCGCCACCGCCAAGAAAGCTACCACGGCCGCCCGGAAGGCCAAGGGCAA
GGCGGCCAAGAAGGTCTTCTCCCTCACCGGCCAGAAGTTCGAAACACCAGAGGAGAGGGA
GCCCCTCAGGATCTTCTACGAATCGCTCTCCAAGCAGATCCCATCCAGCGAGATGGCCCA
ATTCTGGTTAATGGAGCATGGGCTGCTATCTCCGGAAAGAGCAAAGCAAGCCTACGACAG
GAAGCTCAAACGGCAGCAGCAGATCAAATCAGGGACCCCGATTAAGGCGTCCAATTCCAC
CACCGTCACCAAATTCAACAACAACAACAACAACAACAACAACAACAACAAACCTGCGGA
GAGCTCGAAGAAACCGGCGGTTGTTCCTTCTTCCACATCCCGAAGCAGCACGGATCATTC
CGCCGCCAAGGCCAAGAGAAGAGTAGACTACAGCGACGACGACGACGACAAAGAATTCAT
TGTCAAGCTCAAGAGACCCAATTTCAGCTCCAATTCCAAATCCAGGGGTGGCTGAACTCC
TCCTCAACTTGATGAATGGGTCTGTCTGTTTGTTTCTTTCCGGCTAGCACAT



Homology of Contig U35_3514 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None