barSeed - Barley Seed Development Database

Probe CUST_34357_PI390587928

Source Contig U35_3516

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34357_PI390587928	Hv_44K_v2	TTGAGTTGAGAGAGAACATAGACATTACCTTTGTGTAAGCAATGCCTAGTGAAAATAATG	854	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249893.1	944	2e-24	870 - 929	100	60 / 60	plus	ABC08238
MLOC	MLOC_7215.1	1033	7e-23	29 - 88	98	59 / 60	minus	ABC08238
JLOC1	JLOC1_4757.1	1072	4e-23	946 - 1005	98	59 / 60	plus
Harvest21	ABC08238	952	3e-25	852 - 911	100	60 / 60	plus	ABC08238
Harvest35	U35_3516	955	3e-25	855 - 914	100	60 / 60	plus

Contig Sequence (955 bp)

>U35_3516 955 Hv_44K_v2
CCCCTTCTGCTTCCTTGAGCTGGGAGCTGCTTCAGCCATGTCCTCCTTCTCCAGGTTCGA
GGGTAGTAAAGGAGGAGGCGGGAGATCCATATCGCTGGCTGCCTCCAGGGCCAAGCTCGC
CGCGGCCACCGCCACAGCCAAGAAAGCTACTACGGCCGCCCGGGGCAAGGGCAAGGCCAA
GGGCAAGGCGGCCAAGAAGGTCTTCTCCCTCACCGGCCAGAAGTTCGAAACACCAGAGGA
GAGGGAGCCCCTCAGGATCTTCTACGAATCGCTCTCCAAGCAGATCCCATCCAGCGAGAT
GGCCCAATTCTGGTTAATGGAGCATGGGCTGCTATCTCCGGAAAGAGCAAAGCAAGCCTA
CGACAGGAAGCTCAAACGGCAGCAGCAGATCAAATCAGGGACCCCGATTAAGGCGTCCAA
TTCCACCACCGTCACCAAATTCAACAACAACAACAACAACAACAACAACAACAACAACAA
ACCTGCGGAGAGCTCGAAGAAACCGGCGGTTGTTCCTTCTTCCACATCCCGAAGCAGCAC
GGATCATTCCGCCGCCAAGGCCAAGAGAAGAGTAGACTACAGCGACGACGACGACGACAA
AGAATTCATTGTCAAGCTCAAGAGACCCAATTTCAGCTCCAATTCCAAATCCAGGGGTGG
CTGAACTCCTCCTCAACTTGATGAATGGGTCTGTCTGTTTGTTTCTTTCCGGCTAGCACA
TATCCTACTACATGGATCAAGCAATACCGTCTCAGATTCAGATCACTAACTCAACTCTTT
TTTACTTTTCACCCTACAAGTACAACAATGAATTGCCTCTTCTGACTACATATATTTGTG
TATGTGTTGTGTATTTGAGTTGAGAGAGAACATAGACATTACCTTTGTGTAAGCAATGCC
TAGTGAAAATAATGAATGAATAAATAAACACATTCAGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3516 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None