barSeed - Barley Seed Development Database

Probe CUST_34354_PI390587928

Source Contig U35_3519

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34354_PI390587928	Hv_44K_v2	TTTTGGTCACCTGGGAAGAATTTGGTTTTAGACTGAAAAATTGTTATCTCCTTGGCCAAA	679	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK252461.1	806	7e-23	704 - 760	100	57 / 57	plus	ABC08732 ABC08733
MLOC	MLOC_53511.1	2761	7e-23	2057 - 2113	100	57 / 57	minus	ABC08732 ABC08733 ABC20722
JLOC1	JLOC1_34387.1	989	4e-23	879 - 935	100	57 / 57	plus
Harvest21	ABC08732	753	3e-25	680 - 739	100	60 / 60	plus	ABC08732
Harvest35	U35_3519	753	3e-25	680 - 739	100	60 / 60	plus

Contig Sequence (753 bp)

>U35_3519 753 Hv_44K_v2
CGCCGATCCGAATCGCCGCCGCAGCCGCCGGAGAAGATCAAACCCAGCGCCAGCAGCCAT
GTCCGGCGAGGAGGAGGAGAACGCCGCCGAGCTCAAGATCGGCGAAGAGTTTCTCAAGGC
CAAGTGCCTGATGAACTGCGAGGTGGCGATAATCCTGGAGCACAAGTGGGAGCAGCTGCA
GCACATGTCGGACGGCGGCGCCGACCAGGTCTCGCAGGTGTTCGAGAAGTCGCAGGCCTA
CGTCAAGCGCTTCAGCCGCTACAAGAACCCCGACGCCGTCCGCCAGGTCCGCGAGACGCT
CTCCCGCTACAGCCTCGTCGAGTTCGAGCTATGCACCCTCGGCAACCTCTGCCCCGACAC
CGCCGACGAGGCCAAGGCGCTCGTGCCCTCCCTCGTCCCCGGCGGCAGGTTCGACAGCGA
CGACAGGGTCGACAAGATGCTCAACGACCTCTCCCTCATCAAGAAGTTCGAGTAGTTCCT
CTTCTTGTCTTCCTCCTATGCTATGATCGTAAGACATGAGCAGTGTGACCCTCAAATCCA
TGGAGTTGATCAAACCTTGTTGCTATGCTGTCTTGGTGAAAGATGTTGTAGCTGCTGTTT
AATCTTCTTCACGTTCCCCTCCTTATGCTAGATGATCATAAGACGGAGTTAATTAAACAT
TGTTGCTACCATCTTGTGATTTTGGTCACCTGGGAAGAATTTGGTTTTAGACTGAAAAAT
TGTTATCTCCTTGGCCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3519 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g02510.1	143	8e-77	protein\|DNA-directed RNA polymerase II subunit RPB4, putative, expressed
Brachypodium v1_2	Bradi3g01560.1	142	4e-82
Arabidopsis v10	AT5G09920.1	138	3e-68	\| Symbols: RPB15.9, ATRPB15.9, RPB15.9.9, NRPB4 \| RNA polymerase II, Rpb4, core protein \| chr5:3096276-3097370 FORWARD LENGTH=138