barSeed - Barley Seed Development Database

Probe CUST_34350_PI390587928

Source Contig U35_3523

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34350_PI390587928	Hv_44K_v2	GTGCGACATGAATATATATTCATATGCTCCGTCTGTCCCAAAATAACTGTTTTAACTTTG	1568	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.571	1.402	1.035	0.938	0.438	0.428
Raw	256.932	362.678	231.188	330.421	53.646	57.783

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_4947.1	1498	8e-25	1353 - 1412	100	60 / 60	plus
Harvest21	ABC08685	1666	3e-25	1549 - 1608	100	60 / 60	plus	ABC08685
Harvest35	U35_3523	1686	3e-25	1569 - 1628	100	60 / 60	plus

Contig Sequence (1686 bp)

>U35_3523 1686 Hv_44K_v2
GTCACCCTAATCTCTCGCCCCTCTCTCGCCGCCCCGCGAGTCCCCACGCCGCTGCCGCCC
CGTCGCCGTCGCCGTCGCCGTCGCGAACCTCCGCTCCGGTTCCGTCTCCGCCTCCACGCC
TGCTCCGTCCCCGACGTCACACCGTATCCTGCCTCTCCCTCTTCTACCTCAACCGCGGGG
AGCGCCTCCCTCGCCGACCTCCACTGCCCCTCTGCTACATCGCCCGCCTATAGCGAGAAG
GACCTGTTCGTTGGGTACTGCCATCGATGGAGAGCAGTGAACCACTCCAGGATATAATGT
GTGAGTTCCGTGCTGGTAAGATGTCTCTTGAGGGAACACGGGTGGTCCCAGACACACGCA
AGGGGCTTGTTCGTATTGGAAAGGGTGAAGAAGGCTTGGTTCATTTTCAGTGGCTTGACC
GTGGACAAAACATAGTTGAAGATGATCAAATTGTCTTCCCTGATGAGGCTGTCTTTGAGA
AGGTAGCAGAATCTTCTGGAAGGGTGTACATCTTGAAGTTCAGGCATGATAGCAGGAAAT
TCTTCCTATGGATGCAGGAGACAAATGCTGATGGGGACTCGCAGATATGCCGCCAAGTTA
ATGCCTACATAAATCGGCCCTTGGATGGCGATGCAATTTCTATTGAAGCAGAAATGTCAC
ACGAAGATACAGCTGATGATGACATCTCTTCCAGAGCTGGGAATTTAGTTGATCAGAGCA
TGACCGCTGATATGGCTGGTGAAGTGACTTCTGCCGCTGGACCTGTACGACTGGCTGACC
TTCAGAGAATATTGAGCTCTATACAGCCATCTGATGCTACGGCAGATCCTGATGCTGGAT
TGAGACTAGGAGACATCTTGAAGCCTGATTTGATATTGCCACTAATTGAAACTTTGCCCA
TTGAACAGTTGGCATCACATCTTCCGGAGGGTTCTTGGACTGCTGGTGATATTCTTGAGC
TGCTGCAAAGTCCTCCTTTGCGACAGCAACTGGATGCTTTTACTCATGTGCTGCAGACTG
GCCAAATAGATCTTGCTCAATTTGGAGTGGACCCTAGTAAATATAAATTCACAGTTGCTT
CGTTCCTGGAGGCATTGGAAGACTCCGTGGCAAACGCTTGTACAGATGGAGGCAATGATT
CAAAGACCAAGAAAGATGGTGGAAATGATCCCATGGACGAGAGTTGATTGCGGGGTGCAC
CTAGGGCTGTAGCCTTGATGTGAGTTGCTCATGCCGTCATCTGCGGTGGAAAGTATCAAT
TTTTAAATCTGATGGCACGCAAATCACAGGACGTTTTATTTGGCACCCCCTCCGAATCTA
GATACTATTTTGGCTGTGAATTTTAGATGCTTTCAGTCGCTTCCATATTTACCAGTTGAT
TCCGTGTCGTGACTTGAGTATTCTAAAAAATGCTTCCATAGGTTTCGGTTGGTACAATTG
CGTGACATGGATATATTTTCAAAAATGCTTCTGAGGTTCTAGCTGGTACCGTTGTGCGAC
ATGAATACATATGCTCTGTCTGTCCCAAAATAACCGTTTCAACTCTGTACTAGCTCTATG
GTATCGTTGTGCGACATGAATATATATTCATATGCTCCGTCTGTCCCAAAATAACTGTTT
TAACTTTGTACTATCTCTATTACAAAATTATACTAAGTTTAAGACATTTATTTTGGGACG
GAGGGA

Homology of Contig U35_3523 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os05g51640.1	307	4e-172	protein\|adhesion regulating molecule family, putative, expressed
Brachypodium v1_2	Bradi3g37880.2	307	4e-171
Arabidopsis v10	AT2G26590.1	300	4e-106	\| Symbols: RPN13 \| regulatory particle non-ATPase 13 \| chr2:11311182-11314717 REVERSE LENGTH=300