barSeed - Barley Seed Development Database

Probe CUST_34342_PI390587928

Source Contig U35_3531

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34342_PI390587928	Hv_44K_v2	CGTGAAATGTGAAGTAAGGATTATGATAATGGATACATTTCCTCTTGGAGCCCTAAAAAA	902	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_6378.1	999	3e-22	908 - 963	100	56 / 56	plus	ABC10248
JLOC1	JLOC1_4150.1	1079	1e-22	949 - 1004	100	56 / 56	plus
Harvest21	ABC10248	996	5e-23	888 - 943	100	56 / 56	plus	ABC10248
Harvest35	U35_3531	1009	3e-25	903 - 962	100	60 / 60	plus

Contig Sequence (1009 bp)

>U35_3531 1009 Hv_44K_v2
ATCCACCCGACTAAACCCTAGCCTCTCCGTCCGTCCCCAACCTTCACCGCCACTCCGCCC
CCAAACCCCGCCGCCGCCGCCGCCGCAGCAGCCGCCTCCCCTGCGCCATGCGTCCGCTCG
ACGAGAAGGAGACCACGATGGTCTTCGAGAAGCTCTTCAAGTTCACCGGCCCCAACCTGA
AGCACCTCCTGGATCGGCCCTCCGTGGAGGGCCCCGACCCGGAGTCCGGCCGCTACTGCC
TCCGCCTCCACAAGAACCGCGTCTTCTACGCCTCCGAGTCGCTCGTCCGCCGCGCCACCG
CCGTGTCCCGCACGCGCCTCGCCAGCGTCGGCACGCCCATCGGCAAGTTCACCCACGGCG
GCGCCTTCCACCTCACCGTCCACGCGCTCGACCTCCTCGCCGCCCACGCGCGCCGCCGCA
TCTGGCTCAAGCCCGAGACGGAGCGCTCGTTCCTCTTCGGCAACTCCGTGCCCAAGTCCG
CGCTCGCGCGCATCACCGAGAACACCAAGTCCGGCGACGGCGTCGTCGTCATGTCCATGG
CCGACGTGCCCCTCGGGTTTGGGGTCGCCGCCAGGGGCGCGCAGGACTGCAGGAAGGCCG
ACACCAACGCTGTGGTGGTGCTCCACCAGTCCGACGCCGGCGAGTACCTCCGCAAGGAGG
AGGAGCTCATGTGAGGTGATGTTTGACTGTGGTGCTGAAAGATGTGTTCCCTCCATGGTT
GTGATCACCGATCATCTGTGCTTGCAATCAGTGTGCAGTTCGTCGACCATTCTGTATTCT
GCAGTCTTCATAAAGGGCAAGGAAAAGCGGATGTCTGATTGTAGCAGAGTAGTAGAGCAG
ATGTCTGATGGCTATAAATTTTATCATGCTGTAGCTTATCAGGAAGCTACTGCATTGTAT
CGCGTGAAATGTGAAGTAAGGATTATGATAATGGATACATTTCCTCTTGGAGCCCTAAAA
AAAAAAAAAAAATGATCGATAAATTACTTACCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3531 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g47420.1	189	9e-105	protein\|60S ribosome subunit biogenesis protein NIP7, putative, expressed
Brachypodium v1_2	Bradi1g18250.1	189	3e-112
Arabidopsis v10	AT4G15770.1	187	1e-71	RNA binding \| chr4:8978060-8978623 FORWARD LENGTH=187