barSeed - Barley Seed Development Database

Probe CUST_34339_PI390587928

Source Contig U35_3534

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34339_PI390587928	Hv_44K_v2	CAGATAAACATACCAGGTGGAAAGTGCACGTCCTGAAGCTAGTGTTTCTATTGTAAAAAA	505	GeneList: red MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.332	1.518	1.099	0.949	0.431	0.441
Raw	553.975	976.539	620.225	828.363	134.672	149.914

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_9642.1	727	5e-22	553 - 607	100	55 / 55	plus
Harvest21	ABC09370	576	3e-25	506 - 565	100	60 / 60	plus	ABC09370
Harvest35	U35_3534	576	3e-25	506 - 565	100	60 / 60	plus

Contig Sequence (576 bp)

>U35_3534 576 Hv_44K_v2
GGTCTTGGTCTTGGTCTTCTTCCTCCCCCTCCCTTCCCCGTCGACCAACCCCGTCCTCCT
CCGCCGCCAATCGAAGAACTGAACCATGGCGAAGATCAAGCCAAAGGCATTGCTGGCACA
GAGCAAACAGAAGAAGGGCCCTACTCAGATCGGCCTGGTGAGGATCGTCACCTACATCGT
CCTCGGCGTCCTAGCAGTGTCCTCCGTTTACTATGCCTATCAGTACTGGCAGAGCAAAGG
ACCGGCCGTTGCGGCAGCAGCAGCAGAAGGCGCAGTGGGGAACTAACTAAAGCCCCAGGG
ATGCTGTTGATTTTGGTGCTGTTGTTGTATTTTCTTGTCGGTTATTTTTGGCTGTCGCAG
TCCGGGTAAATTTGTGGAACATAGACAGAGCATGCGACGCTTAGTTGTACCCCCCCTGTA
AATTGCCTTAACATTTATGCTTATGTTTCTTTCTGTGACAAAAAAAAAAAAAAAAATGGC
TCCATTGGTAGTGTTCTCTTCTGGTCAGATAAACATACCAGGTGGAAAGTGCACGTCCTG
AAGCTAGTGTTTCTATTGTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3534 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None