barSeed - Barley Seed Development Database

Probe CUST_34337_PI390587928

Source Contig U35_3536

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34337_PI390587928	Hv_44K_v2	CATGTATTTTAATGGATACTCCTAAAGAAGACCTGCACGGATGCTAAATTAAATGCTGTT	2104	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_56602.5	2032	2e-24	1872 - 1931	100	60 / 60	plus	ABC08555 ABC16581
JLOC1	JLOC1_36626.2	2387	8e-25	2090 - 2149	100	60 / 60	plus
JLOC1	JLOC1_36626.1	5255	8e-25	4958 - 5017	100	60 / 60	plus
Harvest21	ABC08555	972	1e-24	20 - 78	100	59 / 59	minus	ABC08555
Harvest35	U35_3536	2240	3e-25	2105 - 2164	100	60 / 60	plus

Contig Sequence (2240 bp)

>U35_3536 2240 Hv_44K_v2
GGCTGCAGGACCGCAGCACGCATCCACGACGCACCTCCTTTCTCCGCCTCCCTCCTCTAC
CGTGCTCCCACCCCCTCCTCCTCCTCGTCCTCGATCTCTCCTCCCATCCACCATCCCGCA
ACGACCCATGCGCCGCTAGCCAAGCCATGCAGATGCAGCCCCACCCGGACCCCGCGTCGC
GCTCGCGCCCGCGCCCGCGCCAGGAGGAGGAGGAGGAGCACACCCCGCCGCCCCCGCCGG
AGCCCATGCCCACGGAGGAGGAGGCGGTGCCCAGCCCGGATGCGGACGAGGTGAAGGACG
CGCCTGCTGCTGCGGAGGCGGATGAGGAGCAGGCGGAGGCGGTGGACAGGGACAAGGAGG
AGGAGGAGGCCAGGGACGGGGACGAGAAGGAGGCGGAGGAGAGGAGGGGCAGGGGGCGGA
AGCGAGGGAGGCGGCCCGGGGCGCCCAGGGGCCTCGTCATGGTGAAGCGGGAGCTGCTCG
CGCGCTGCATGACCTGCCCGCTCTGCAACCGCCTCCTCCGCGACGCCACCACCGTCTCCG
AGTGCCTCCACACATTTTGTAGAAAGTGTATATACAAGAAGTTTAATGACGAGGAGGTAG
AGTCCTGCCCAGTATGTAACATTGATCTTGGCTGCACTCCAGTCGAGAAGCTTAGAGCTG
ACCACAGTCTGCACGATGTAAGATCCAAAATCTTCCCCTTCAAAAGAAAGAAGATTAAGG
CTGAAGATGTTGCATCTCCTGATTCACCTCCTAATAAAAGGAAAGAGAGATCCATCTCTT
CATTAGTGGTCCATACACCTAGATTAACACCGACAGGATCGACTGGACGGCGGACAAAGG
TAGTTACCAGGAAAGCTGCTGCTGCGTTGCATGGCCTTGCTCCTACCGTTGACAATCCTG
TGAAAAAGGAAAACAGTGACAAGAGTGCTCATAGCTCAAGCTTGCCTGCTAATTTGGGCA
AAGTGCCAAAAACAAAGAGACAGATATTGTCAAATGCGGAGGAGGCATCTAACTGTTCCA
GCAATAAAGATACTGAAGATGATAGTAAGGACATGGCAGATAATGCTGAGCTCTGGAGAC
CTTTAAATTGTCTGGTCGAAGCTGCAAACAGGACAAAGTCCTTTAGGTCGAGTTTACAAG
GTTCAGGTGTTAAAAGAGAGCAGCTTAATGGTTCTCCCAGTAGCACAAATGGTAACAAAA
CANACCCAAAAGAGCATCCGAAGAAACCCAAAACTGAGGATGATAATAAAGATGCTCCAG
TTCCAGCAGTGACGCTAAAAAGGAAACTTAAAGGGGCTGGGCGGAGAAGGAGCGGACTTC
GAGCTCCAGCCGATGGGGATCCTGATGGGGCACTTAAGCAGAACGAAAAGAGATTCAACT
GCATATGGTTTTCGTTGGTTGCCTCACTCGAACAGAAAGGAGACTCACCTCTACCACAGA
TACCTTCACACTATTTGCGAATAAAAGATGCAAATATACCCGCTTCGTCTATCCAAAAGT
ACCTCGTGCAGAAACTCAGTCTCCCAAGTGAGTCCGAGGTGGAAATAAATTGCTGCGGGC
AGCCAGTGAACCCTACACAACCTCTGCGCAATTTAGTAGAGTTGTGGCTGAGGGGGCGAT
CACCGCAGGCAACACAGGCCATTGTAGGCTCCCCTGCGGAAGAGTTTGTGATGGTGCTAA
ATTATGGACGGCCAAAGGCCATGGAACCTTGAGTGCACCGTAATGATTCAACCCATTTCC
TTTCGAAAGGTCAGGTTTTTTCTGCCATAGCCAGCCATTTGCTGGGCCGATGGAAGAGGT
TGTCGAAAGATGAAGTCCCCGTTGGTACACAACGTCGTGATGTGGCTGGCTCCCTCGACA
GCCAGCCCTCGGCGACATATTCATGTATTCATTCATGTTGGTAGGTATTGTTGTTCTTCG
ATTCCATTATGATATTTTTTTTCTTATTTATTATACACCAAAGATAGATGAAAAATGATC
TTTAGATTGGATATAAAGAGAGGGAACAGTCTCAACCATTGATGCTTCTGATTGTAAGGA
TGACTATGACTATGAGTGGATTGGAAATTGCCATTTGGTCGTGTCATAACTTGCTGTGGC
GCGACATGTATTTTAATGGATACTCCTAAAGAAGACCTGCACGGATGCTAAATTAAATGC
TGTTATAAAGATGTAGGTTGTAATTGGTACTGGTGTTTTGGATTCTACAATGTTGGTCTT
CCTAAAAAAAAAAAAAAAAA

Homology of Contig U35_3536 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g43360.2	511	0.0	protein\|zinc finger, C3HC4 type domain containing protein, expressed
Brachypodium v1_2	Bradi1g14270.1	503	0.0
Arabidopsis v10	AT2G30580.1	420	1e-101	\| Symbols: DRIP2 \| DREB2A-interacting protein 2 \| chr2:13026444-13030363 FORWARD LENGTH=420