barSeed - Barley Seed Development Database

Probe CUST_34336_PI390587928

Source Contig U35_3537

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34336_PI390587928	Hv_44K_v2	TTTGTACCCAGATGTTTTTGGAACCCATCAACTGATTGCAAGTTGCAATGGAGATTTTTT	1580	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370969	2423	7e-23	2356 - 2416	98	60 / 61	plus	ABC08821 ABC10382
MLOC	MLOC_4749.1	1685	7e-23	4 - 64	98	60 / 61	minus	ABC08821 ABC10382
MLOC	MLOC_4749.2	2191	7e-23	4 - 64	98	60 / 61	minus	ABC08821 ABC10382
JLOC1	JLOC1_2996.3	2294	4e-23	2023 - 2083	98	60 / 61	plus
JLOC1	JLOC1_2996.2	2707	4e-23	2436 - 2496	98	60 / 61	plus
JLOC1	JLOC1_2996.1	3710	4e-23	3439 - 3499	98	60 / 61	plus
Harvest21	ABC08821	1665	1e-23	1581 - 1641	98	60 / 61	plus	ABC08821
Harvest35	U35_3537	1688	3e-25	1581 - 1640	100	60 / 60	plus

Contig Sequence (1688 bp)

>U35_3537 1688 Hv_44K_v2
AATGGAGTCTGAATCTAACATCCATACAGACAATCGCTACTGTTTGCATGTTCTTGGCTG
GAAAAGTCGAAGAAACACCTAGGCCTTTGAAGGATGTCATCCTGGTTTCTTATGAGCTTA
TTCATAAAAAGGATCCTGCTGCTGGTCAGAAAATCAAGCAGAGGGAAGTATATGATCGGC
AAAAGGAACTCATTTTACTTGGGGAGCGAGTTGTACTTGCAACACTTGGTTTTGACCTTA
ATGTGCACCATCCTTACAAGCCCTTGGTTGAAACAATAAAAAAATTCAAGATTACTCATA
ATGCGCTTCCTCAGGTTGCCTGGAATTTTGTCAATGATGGGCTGCGCACTTCACTCTGTC
TGCAATTCAAGCCCCATCTTATTGCAGCAGGTGCTCTCTTTTTGGCTGGTAAGTTTCTCA
AAGTGAAATTTCTTCCAGATGACGGTGAGAAGGCTTGGTATCAGGAGTTTGATGTGACAC
CAAGACAGCTGGAAGAGGTTAGCAATCAAATGTTAGAGCTGTATGAGCAAAACCGTGTTG
TACAGTCACAACCAACAAATGGGAGTGAAGCTGAAGGTAGCTCAGCTGGTGTGCCTAATC
AAAGGATCTCCGTAAAAACAGCAGCCAACTCTGAGGAACCTCCTGTTGTGCATCATCCAG
CATCCAAACAGTCAGATTCCAGTGCTTCTACACCAACAGGTGTTCCAATTCATAATGGTG
CTGAGCGCTCAAAGCCACACAAGCATATTGGTAGCCACAGAAGTCTTCAAAATGACAATG
GTGACCATGAAAACGACAAAATAAGTAGTCAGAGTGGAGGTAGAGTTGATACTAGTACAA
AGGATGGTTTGCATGATGGCACAAAGTCCTTGCCGATAAGTTCGAGGCCCAGCGACAAAC
CTGGTACTCCAACAGAAGAAGAGAAGCCTCTTCCAGCGCATGCTAGTTCCAGTGAATCGA
GAGATGGTAATCTCACTAACAGTGGTGATCCCAGTGTCTCATCCTCCATGATGGATGCCA
TGAATAAAATTGACAAGGACAAGGTAAAGGCAGCTTTGGAGAAGCGAAGAAATTCGAAGG
GTTATGTTGCTAGGAAGGTAGATGTGATGGATGATGACGACCTACTTGAGAGGGAATTAG
AACATGGTGTGGAGTTGGCTGTTGAGGATGAGAAGATCAAGCAGGAGAGGGACCATTGTA
GTGTGCATCAAGAGGATCACCGTAATGCTGATGACGTTGCAGAAAATGGGGACAATAATG
GCGAGCAGAATGTTCGAGAGACTGCAAAAGAGGCTGAGGTTCTGGTGAACATTAAAGATG
AGCGGTCTCCAACCAAGAAATGATGCTTTCGAGCACAAGCCGCAGCATCCTAGTGATACG
CCAAAGCACAGCGTGAGCCACCATGGTGCTCAGCTTGTTGGTAGACATGAAAACATAAAA
TGCCTCGACCTGAAGGTTGATGGGCCAGAATTGATGTTCTAGAGTCTACACTTGGTAGAA
TTCTTGGTACGAGCATAGGCACGTGTTACTGGAAATGTAGCTGCTCTGTGGACTGTTGAT
GAGACATCCAGGTCTTCATGTTTGTACCCAGATGTTTTTGGAACCCATCAACTGATTGCA
AGTTGCAATGGAGATTTTTTTGCGGCCGCTCGAGCAGTTTCGAAAGGGCCCAATTCGCCC
TATAGTAG

Homology of Contig U35_3537 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g30020.2	544	2e-159	protein\|cyclin-T1-4, putative, expressed
Brachypodium v1_2	Bradi2g22097.1	584	0.0
Arabidopsis v10	AT5G45190.2	590	1e-102	Cyclin family protein \| chr5:18277808-18280733 REVERSE LENGTH=590