barSeed - Barley Seed Development Database

Probe CUST_34328_PI390587928

Source Contig U35_3545

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34328_PI390587928	Hv_44K_v2	TTGTGACCAAGGTGAAGAAGATAGTCGTGCTGGGTGGAGCCTTCTTCGCAGCGGGGAATG	608	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11064.1	1526	2e-24	659 - 718	100	60 / 60	minus	ABC08464
JLOC1	JLOC1_7289.1	1611	8e-25	772 - 831	100	60 / 60	plus
Harvest21	ABC08465	772	3e-25	605 - 664	100	60 / 60	plus
Harvest21	ABC08464	1321	3e-25	666 - 725	100	60 / 60	minus	ABC08464
Harvest21	ABC08463	915	3e-25	610 - 669	100	60 / 60	plus
Harvest35	U35_3546	1003	3e-25	279 - 338	100	60 / 60	plus
Harvest35	U35_3545	777	3e-25	609 - 668	100	60 / 60	plus

Contig Sequence (777 bp)

>U35_3545 777 Hv_44K_v2
GGAAAACTCTGCCTAACCTGCAGGACAAGAAACAAAGAACGGAAGGAAGGAAGGAAGAAG
TTCCAGGAAAGGAGGGAAGAGAAGACGGAGAGTGACCGAGGGACAGAGGCTCTATCCACT
CGAGCGATCGACCGGGCGGGGATCGATGGCGGCCAACGGGCGTCAGATCCGGCCGGCGGA
GAAGAGGGAGACGATGAAGCTCATCATCGACACCGATCCCGGCATAGACGACAGCGTGGC
GACCATGATGGCGTTCCGAGCGCCCGGCGTCGAGGTCCTAGGGCTCACCACCATCTTCGG
CAACTGCACCACCGCATACGCCACCCGCAACGCGTTGATTCTGTGTGAGAAGGCAGGCCG
TCCTGACGTGCCGGTGGCGGAGGGCAGCGCCGAGCCTCTCAAGGGAGGGAAGCCGCAGGT
TGCCGACTTTGTTCACGGATCCGATGGCCTTGGGAACATATCTGTTCCTGAACCCACCAC
CAAGAAAGCAGAGCAAACCGCCACGGAGTTTCTGGTCGACATGGTGTCGCAGTTCCCCGG
GGAGGTCTCGGTGCTCGCCTTGGGCCCTCTGACCAACCTCGCATTGGCCATGAAGATGGA
CCCCTCCTTTGTGACCAAGGTGAAGAAGATAGTCGTGCTGGGTGGAGCCTTCTTCGCAGC
GGGGAATGCCACCCCTTCAGCTGAAGCAAACACAGACAGCGACCTGTCGGAGCTGAGGAG
CTCCGGCGGGAAGCAGGCGCAGTTCCTCTGCGACATCTGCAAGTTCTACAGCGACTG

Homology of Contig U35_3545 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g39440.2	338	1e-103	protein\|inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed
Brachypodium v1_2	Bradi4g38490.1	330	1e-110
Arabidopsis v10	AT2G36310.1	336	1e-81	\| Symbols: URH1 \| uridine-ribohydrolase 1 \| chr2:15224692-15226633 REVERSE LENGTH=336