barSeed - Barley Seed Development Database

Probe CUST_34327_PI390587928

Source Contig U35_3546

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34327_PI390587928	Hv_44K_v2	CAGACACATTGTCTGGTGGCATTATTGAACTGCTGGTAATGAATTGTGATGCTCAAAAAA	932	GeneList: salmon MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.129	2.815	1.083	0.680	0.277	0.369
Raw	205.157	280.410	98.005	98.698	15.091	20.479

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11064.1	1526	3e-21	8 - 64	98	56 / 57	minus	ABC08464
JLOC1	JLOC1_7289.1	1611	2e-21	1426 - 1482	98	56 / 57	plus
Harvest21	ABC08464	1321	3e-25	12 - 71	100	60 / 60	minus	ABC08464
Harvest35	U35_3546	1003	3e-25	933 - 992	100	60 / 60	plus

Contig Sequence (1003 bp)

>U35_3546 1003 Hv_44K_v2
ATTTGCTTGGCAGTGTGAGAAGGCAGGCCGTCCCGATGTGCCGGTGGCGGAGGGCAGCGC
CGAGCCTCTCAAGGGAGGGAAGCCGCAGGTTGCCGACTTTGTTCACGGATCCGATGGCCT
CGGGAACATATCTGTTCCTGAACCCACCATCAAGAAAGCAGAGCAAACCGCCACGGAATT
TCTGGTCGACAAGGTGTCGCAGTTCCCCGGGGAGGTCTCGGTGCTCGCCTTGGGCCCTCT
GACCAACCTCGCATTGGCCATGAAGATGGACCCCTCCTTTGTGACCAAGGTGAAGAAGAT
AGTCGTGCTGGGTGGAGCCTTCTTCGCAGCGGGGAATGCCACCCCTTCAGCTGAAGCAAA
CATCCACAGCGACCCGGAGGCGGCGGACATCGTGTTCACCTCCGGCGCGGATATCGCCGT
GGTCGGCCTCAACATCACCACCCAGGTGAGCTTCACAGAGGCGGACCTGTCGGAGCTGAG
GAGCTCCGGCGGGAAGCAGGCGCAGTTCCTCTGCGACATCTGCAAGTTCTACAGCGACTG
GCACCTCCACTCGTACGGTGACCCCGCCGTGTTCCTCCACGACCCGGTGAGCTTCGCGGC
GCTGGTCCGGCCGGAGCTCTTCACGTTCAGGAAGGGCGTGGTGCGGGTGGAGACCCAGGG
CATCTGCAGAGGCCACACATCCATGGACATGGGGCTCAAGAAGTTCAATTCAGAGAACGC
GTGGTCGGGCTACACGCCGATCTCGGTGGCGTGGACGGTTGATACGGCCAAGGTGGTCGC
CTTGGTCAAGGAGCTCCTCAGCAATTAAGCAGCAGCCTAGTTGATGATCCGTATACCTGC
GCATCAAATGGTTTGAAATTGTACTAATATTGTATAGATCGATGGGCCGATCCACTCATG
ATTTATGTGTACCCCATTCGACGCACTGCATGCAGACACATTGTCTGGTGGCATTATTGA
ACTGCTGGTAATGAATTGTGATGCTCAAAAAAAAAAAAAAAAA

Homology of Contig U35_3546 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g39440.2	338	1e-151	protein\|inosine-uridine preferring nucleoside hydrolase family protein, putative, expressed
Brachypodium v1_2	Bradi4g38490.1	330	2e-165
Arabidopsis v10	AT2G36310.1	336	1e-123	\| Symbols: URH1 \| uridine-ribohydrolase 1 \| chr2:15224692-15226633 REVERSE LENGTH=336