barSeed - Barley Seed Development Database

Probe CUST_34323_PI390587928

Source Contig U35_3550

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_34323_PI390587928	Hv_44K_v2	TATTGATCCACGACAAGCATCAATATCTGGAAGCATCAAAGTGCCTTGAACAACAAAAAA	1045	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.612	0.957	1.084	1.639	0.863	0.947
Raw	29.478	77.848	71.782	164.061	31.446	37.803

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK360980	1175	7e-23	1017 - 1073	100	57 / 57	plus	ABC23929
MLOC	MLOC_5205.1	2109	7e-23	1528 - 1584	100	57 / 57	minus	ABC23929
JLOC1	JLOC1_3340.1	1433	4e-23	855 - 911	100	57 / 57	minus
Harvest35	U35_3550	1125	3e-25	1046 - 1105	100	60 / 60	plus

Contig Sequence (1125 bp)

>U35_3550 1125 Hv_44K_v2
AAGACGCAGAGCTCGTGCAACGTGGAGCGCGCGCCCGCCGCACACGCGCGCCACTAGTAG
ATAACGCACGCGCTCATCGCAAAGACACCAAGCTCGCAATGTCTAGCGCCGCTGACACAG
CTGCGGCCGCGGCCGTCGCCGCCGTTGCCGGCTCGTCGGAACCCGCGGCGTTGCCGCTCA
GCGGGCGCGTGGCCATCGTGACCGGCGCGTCGCGCGGCATCGGGCGAGCCATCGCGGCCC
ACCTCTCCTCCCTCGGCGCGAGCGTCGTCCTGGGCTACGCGGCCAGCGCGGCGGAGGCCG
ACGCGCTCGCCGCGGAGCTCCCACGCGCCGTAGCCGTGAGGGCCGACGTGTCCGAGGAGG
CCGGCGTGCGCTCCCTCTTCGACGCCGCCGAGTCAGCCTTCGGCTGCGCGGCGCCGCACA
TCCTGGTCGCCAACGCCGGCGTGCTGGACGACAAGTACCCGCCCCTCGCCGACACCGCCA
CGGCGGACTTCGACCGCGTGCTCGCCGTGAACGCGCGCGGCGCCTTCCTCTGCCTCCGCG
AGGCCGCCAACCGCCTGCCCCGCGGCGGCGGCGGCCGGATCGTGGCCGTGACGTCGTCCG
TGGTCGCGTCGTCGCCGACGGGGTACTCCGCTTACACGGCGTCCAAGGCGGCCGTGGAGG
CGATGGTGCGGACGATGGCCAAGGAGCTCAAGGGCACGCGCGTGACGGCCAACTGCGTGG
CTCCGGGGGCCACGGCCACCGACATGTTCTTCGCCGGGAAGAGCGACGAGACCGTGAGGC
GGACCGCGGAGACGAACCCCATGGAGCGGCTCGGGGAGGCCGGCGACATAGCGCCGGTGG
TCGGCTTCCTCTGCACCGACGCCGCCGAGTGGGTCAACGGGCAGGTCGTCCGTGTCAACG
GCGGGTACGTCTGATAGTCGATCTGTTTGGCTGGCCCTGCCATGCCATTAGCCATTACGG
TGTGAACGAAATAATGCGTCTGTGTGTTGCAGAAAACCAGACAAGTAAATATGGCAGGAA
TTTGTGTTTGGCATAATTTACATTTTATTGATCCACGACAAGCATCAATATCTGGAAGCA
TCAAAGTGCCTTGAACAACAAAAAAAAAAAAAAAAGGCTCGAGGG

Homology of Contig U35_3550 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g37420.1	266	9e-114	protein\|versicolorin reductase, putative, expressed
Brachypodium v1_2	Bradi1g56160.1	283	3e-106
Arabidopsis v10	AT3G03980.1	270	1e-73	NAD(P)-binding Rossmann-fold superfamily protein \| chr3:1031786-1033081 FORWARD LENGTH=270